Pinned Repositories
abs
Aberrant splicing;Cryptic splice site;Cryptic exons;Cryptic Junctions;Splicing fidelity
Advanced-Stochastic-Modeling
Course material for Advanced Stochastic Modeling, STA531, Duke University, Spring 2016.
Algorithms-2
Several algorithms and data structures implemented in C++ by me (credited to others where necessary).
algorithms-illuminated
My notes for Tim Roughgarden's awesome course on Algorithms and his 4 part books
AlignDemo
Sequence Alignment Algorithm Demo
faers
faers R package
GenomeBrowser-CPlusPlus
A genome browser written in C++
intron_order
A method to calculate intron splicing order
Machine-Learning-A-Probabilistic-Perspective-Solutions
My solutions to Kevin Murphy Machine Learning Book
limeng12's Repositories
limeng12/intron_order
A method to calculate intron splicing order
limeng12/abs
Aberrant splicing;Cryptic splice site;Cryptic exons;Cryptic Junctions;Splicing fidelity
limeng12/algorithms-illuminated
My notes for Tim Roughgarden's awesome course on Algorithms and his 4 part books
limeng12/AlignDemo
Sequence Alignment Algorithm Demo
limeng12/Alleloscope
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
limeng12/andi
♥ Efficient Estimation of Evolutionary Distances
limeng12/CLRS
:notebook:Solutions to Introduction to Algorithms
limeng12/CLRS-1
📚 Solutions to Introduction to Algorithms Third Edition
limeng12/cs-video-courses
List of Computer Science courses with video lectures.
limeng12/d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
limeng12/data-science-sequencing.github.io
Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
limeng12/DrugAnalysis
FAERSAnalysis toolkit
limeng12/ExonImpact
Prioritizing MISO events' pathogenic effect
limeng12/giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
limeng12/HapCUT2
software tools for haplotype assembly from sequence data
limeng12/lpsymphony
limeng12/math-science-video-lectures
List of Science courses with video lectures
limeng12/MEWCP-ReConSLS
limeng12/mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
limeng12/mixOmics
Development repository for the Bioconductor package 'mixOmics '
limeng12/mwc
This repository contains the C++ source codes for the paper: Sun Y, Li X, Erst A. Using Statistical Measures and Machine Learning for Graph Reduction to Solve Maximum Weight Clique Problems. IEEE Transactions on Pattern Analysis and Machine Intelligence, accepted in Nov 2019.
limeng12/ompr
R package to model Mixed Integer Linear Programs
limeng12/phylonium
♥ Fast and Accurate Estimation of Evolutionary Distances
limeng12/PureCLIP
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
limeng12/scarHRD
limeng12/sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
limeng12/SUPPA
SUPPA2: Fast quantification of differential splicing
limeng12/SYMPHONY
SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features
limeng12/tre
The approximate regex matching library and agrep command line tool.
limeng12/TTAnalysisSolutions
Solutions to the exercises Terence Tao's Analysis I.