Pinned Repositories
abs
Aberrant splicing;Cryptic splice site;Cryptic exons;Cryptic Junctions;Splicing fidelity
Advanced-Stochastic-Modeling
Course material for Advanced Stochastic Modeling, STA531, Duke University, Spring 2016.
Algorithms-2
Several algorithms and data structures implemented in C++ by me (credited to others where necessary).
algorithms-illuminated
My notes for Tim Roughgarden's awesome course on Algorithms and his 4 part books
AlignDemo
Sequence Alignment Algorithm Demo
faers
faers R package
GenomeBrowser-CPlusPlus
A genome browser written in C++
intron_order
A method to calculate intron splicing order
Machine-Learning-A-Probabilistic-Perspective-Solutions
My solutions to Kevin Murphy Machine Learning Book
limeng12's Repositories
limeng12/faers
faers R package
limeng12/Machine-Learning-A-Probabilistic-Perspective-Solutions
My solutions to Kevin Murphy Machine Learning Book
limeng12/Advanced-Stochastic-Modeling
Course material for Advanced Stochastic Modeling, STA531, Duke University, Spring 2016.
limeng12/Algorithms-2
Several algorithms and data structures implemented in C++ by me (credited to others where necessary).
limeng12/AS-Browser
limeng12/awesome
A curated list of awesome lists
limeng12/Bayesian-Statistics
Course material for Bayesian and Modern Statistics, STA601, Duke University, Spring 2015.
limeng12/chip-seq-pipeline2
limeng12/clip-data-science
Repository for Data Science Issues in Understanding Protein-RNA Interactions
limeng12/dbeaver
Free universal database manager and SQL client
limeng12/fact_sheet
limeng12/from_data_2_table_2_figure
NGS_report
limeng12/HapCHAT
Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
limeng12/icibm
limeng12/ISCO-spring-school
Material for the ISCO 2018 spring school: “Advanced Mixed Integer Programming Formulation Techniques”
limeng12/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
limeng12/MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
limeng12/My-Rscript
My usefull Rscript
limeng12/oneliners
Useful bash one-liners for bioinformatics.
limeng12/pheatmap
Pretty heatmaps
limeng12/ranger
A Fast Implementation of Random Forests
limeng12/Restart-and-Random-Walk-in-Local-Search-for-MVWC
for DIMACS, BHOSLIB and Winner Determination Problem graphs
limeng12/seqtk
Toolkit for processing sequences in FASTA/Q formats
limeng12/solutions
limeng12/SpliceAI
A deep learning-based tool to identify splice variants
limeng12/STAR
RNA-seq aligner
limeng12/stat-cookbook
:orange_book: The probability and statistics cookbook
limeng12/the_silver_searcher
A code-searching tool similar to ack, but faster.
limeng12/theolb
The Open Lab Book: A collection of freely distributable scientific protocols
limeng12/ThinkBayes
Code repository for Think Bayes.