Pinned Repositories
biostar-tutorials
Code for biostar tutorials - mostly R and Perl
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
url
Baacloud官网
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
bioinf-python
Python for Bioinformatics
ChIP-seq-analysis
chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
ChIPseq
coverage
RGASP3 coverage statistics pipeline
cruk-bioinf-sschool
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool
lingdudefeiteng's Repositories
lingdudefeiteng/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
lingdudefeiteng/url
Baacloud官网
lingdudefeiteng/ChIPseq
lingdudefeiteng/cruk-bioinf-sschool
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool
lingdudefeiteng/deeplearning-biology
A list of deep learning implementations in biology
lingdudefeiteng/homer-idr
Applying IDR analysis to Homer peaks.
lingdudefeiteng/hosts
:statue_of_liberty:最新可用的google hosts文件。镜像：
lingdudefeiteng/hosts-1
镜像：https://coding.net/u/scaffrey/p/hosts/git
lingdudefeiteng/icudt55l
lingdudefeiteng/icudt55l.zip
lingdudefeiteng/Intro-to-Shell
Introduction to the Unix shell
lingdudefeiteng/KrumlovTrinityWorkshopJan2016
Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016
lingdudefeiteng/langouetastrie-scidata2016-chicken-rnaseq-retina-code
lingdudefeiteng/metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
lingdudefeiteng/mmseq
Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
lingdudefeiteng/NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
lingdudefeiteng/ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
lingdudefeiteng/notes-python
中文 Python 笔记
lingdudefeiteng/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
lingdudefeiteng/RNA-seq-analysis
RNAseq analysis notes from Tommy Tang
lingdudefeiteng/RNASeq_pipeline
Set of scripts for RNA-Seq data processing
lingdudefeiteng/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
lingdudefeiteng/scATAC-seq_notes
scATAC-seq data analysis tools and papers
lingdudefeiteng/scHiC_notes
Notes on single-cell Hi-C technologies, tools, and data
lingdudefeiteng/shareseq-pipeline
lingdudefeiteng/sickle
Windowed Adaptive Trimming for fastq files using quality
lingdudefeiteng/STAR
RNA-seq aligner
lingdudefeiteng/starrpeaker
STARR-seq peak caller
lingdudefeiteng/Training-modules
Materials for short, half-day workshops
lingdudefeiteng/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly