lingdudefeiteng

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bioinf-python

Python for Bioinformatics

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

ChIP-seq-analysis

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

ChIPseq

coverage

RGASP3 coverage statistics pipeline

cruk-bioinf-sschool

http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool

In-depth-NGS-Data-Analysis-Course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

url

Baacloud官网

lingdudefeiteng/RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

lingdudefeiteng/piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

lingdudefeiteng/ngs

Source for building the bschiffthaler/ngs docker

lingdudefeiteng/deepTools

Tools to process and analyze deep sequencing data.

lingdudefeiteng/HeatmapGenerator

HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields.

lingdudefeiteng/cufflinks

lingdudefeiteng/pipeline

bradner lab computation pipeline scripts

lingdudefeiteng/labs

Scripts for HarvardX courses: PH525x

lingdudefeiteng/ChIP-seq-analysis

lingdudefeiteng/biostar-tutorials

Code for biostar tutorials - mostly R and Perl

lingdudefeiteng/oneliners

Useful bash one-liners for bioinformatics.

lingdudefeiteng/chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

lingdudefeiteng/bioinf-python

Python for Bioinformatics

lingdudefeiteng/rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

lingdudefeiteng/bcbb

Incubator for useful bioinformatics code, primarily in Python and R

lingdudefeiteng/rnaseq

Sample R scripts for simulating replicate size scenarios and analysing the resulting data sets using various differential expression call methods

lingdudefeiteng/peakzilla

Peakzilla is a new algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: jonas.steinmann@imba.oeaw.ac.at

lingdudefeiteng/spp-idr

Wrappers around NGS peak callers to both call peaks and run IDR

lingdudefeiteng/pipette

variant discovery and annotation using GATK and Ensembl

lingdudefeiteng/coverage

RGASP3 coverage statistics pipeline