linsalrob

Professor of CS and Biology Writing bioinformatics code to study viruses, phages, and metagenomes.

Flinders UniversityAdelaide, Australia

Pinned Repositories

atavide
Atavistic processing of metagenomics data.
Language:Python2 4 72
ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Language:HTML230 11 161
EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
Language:Jupyter Notebook39 9 116
fastq-pair
Match up paired end fastq files quickly and efficiently.
Language:C144 5 2232
partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Language:Perl25 7 46
PhiSpy
Prediction of prophages from bacterial genomes
Language:Jupyter Notebook73 10 5521
PhispyAnalysis
Analysis of phispy data
Language:Jupyter Notebook4 5 02
PyFBA
A python implementation of flux balance analysis to model microbial metabolism
Language:Python25 6 914
sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
Language:Python28 5 139
SRA_Metadata
Get, parse, and extract information from the SRA metadata files
Language:Python37 3 25

linsalrob/cameraGUI
A repository for the Prosilica Camera GUI
Language:Python3 6 01
linsalrob/CoralImageAnalysis
A central repo for all the coral image analysis code generated by the Edwards bioinformatics lab at San Diego State University
Language:Python2 5 02
linsalrob/qudaich
Qudaich (queries and unique database alignment inferred by clustering homologs) is a software package for aligning sequences.
Language:C++2 4 61
linsalrob/seqc
C and C++ libraries for working with sequences
1 3 0
linsalrob/AtlasSensors
Language:Arduino3 0
linsalrob/bioinformatics
Robs General Bioinformatics Repo.... Free code for all to use
Language:Perl3 01
linsalrob/CrAPy
Cross-assembly in Python
Language:Python3 0
linsalrob/depth-profile-video-processing
Video processing tools for analyzing the depth profiles from Line Islands (and other coral reefs?) transects
Language:Python3 0
linsalrob/edwards-opensocial
Automatically exported from code.google.com/p/edwards-opensocial
Language:JavaScript2 0
linsalrob/edwardslab-android
Automatically exported from code.google.com/p/edwardslab-android
Language:Java2 0
linsalrob/FuzzyMetabolicModeling
This is code from Rob Edwards' bioinformatics group about fuzzy metabolic networks and their implementations to solve challenges in microbial genomics and metagenomics
3 0
linsalrob/qiime_scripts
A few scripts that Rob has written to handle qiime files
Language:Python3 0