Issues
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- 0
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Additional testing/validation genomes
#42 opened by linsalrob - 0
TypeError: start=x <class 'float'>
#68 opened by schorlton-bugseq - 2
Error during processing, no result output - TypeError: expected str, bytes or os.PathLike object, not StringIO
#67 opened by naturepoker - 2
output files not created
#66 opened by oirazoki - 1
The glibc version is not compatible
#65 opened by work-liuyang - 5
Error when sequence ID is too long
#53 opened by jcmckerral - 3
conda installation failed
#62 opened by dr-joe-wirth - 1
Parameter to indicate file name prefixes+
#58 opened by ireneortega - 1
pVOG db no longer available
#61 opened by raw-lab - 1
- 0
"Contig starting with a partial ORF" warning
#60 opened by EGTortuero - 4
- 1
No bases were counted for orf
#57 opened by simone-pignotti - 1
Coordinates interpretation
#56 opened by iferres - 0
GFF3 File - Include the att sites
#55 opened by DNADoubleFelix - 0
prophage fasta file
#54 opened by mujiezhang - 6
Huge memory consumption and runtime with NNNNs
#52 opened by deprekate - 0
RepeatFinder: NNNNNN
#51 opened by linsalrob - 1
phmms option cleanup
#47 opened by linsalrob - 10
Unable to finish + excessive RAM usage
#45 opened by dcarrillouu - 0
The misc_feature location off by 1
#48 opened by deprekate - 1
Not phage function
#49 opened by pdec - 3
multi-contigs
#50 opened by frihaka - 0
gbk outpout is the same file as gbk input file
#46 opened by Taalouane - 5
- 0
- 5
ValueError: missing molecule_type in annotations
#41 opened by tauqeer9 - 0
Fixing phmms data use condition
#39 opened by pdec - 1
Selecting features measurements
#36 opened by pdec - 0
Keep CDS parts in original frame
#38 opened by pdec - 0
Write out phage/not phage genbank files
#37 opened by linsalrob - 0
Splitting/merging joined features
#35 opened by pdec - 0
Fix status score when rank value above the threshold
#34 opened by pdec - 0
Mark prophage regions at the end of contigs
#33 opened by linsalrob - 1
numpy.core.umath_tests
#13 opened by linsalrob - 1
Lower the gene window
#20 opened by deprekate - 1
Minor changes and suguestions
#28 opened by metageni - 1
- 2
ASCI
#19 opened by bognabognabogna - 0
repeatfinder breaks with CentOS8
#29 opened by linsalrob - 2
Move all command line argument parsing code in PhiSpy.py to the helper_functions.py file
#24 opened by deprekate - 0
- 0
- 2
Output formatting and tempRepeatDNA
#9 opened by JoeHeffron - 1
switch randomforest implementation
#21 opened by deprekate - 1
Output GFF3
#17 opened by JFsanchezherrero - 2
PhiSpy does not support Python 3
#7 opened by chris-rands - 0
PhiSpy installation
#8 opened by JPiy