raw-lab
Dr. Richard Allen White III lab of computational and synthetic virology. Our lab group is elucidating the largest genetic repository on planet the viruses.
University of North Carolina at Charlotte 150 N Research Campus Dr, Kannapolis, NC 28081
Pinned Repositories
atlas-original
From Pre-print. ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data
BINF2111
Introduction of fundamentals of programming for bioinformatics (sometimes called “scripting”) using current programming languages and paradigms. Introduces both the language and the use of the language within a Unix environment, demonstrating how interpreted languages serve both as a useful tool for writing and testing programs interactively and as a powerful data analysis and processing tool for bioinformatics. Hands-on computing labs in which students learn bioinformatics computing and programming are also included.
BINF6399
Principles of Team Science at University of North Carolina at Charlotte
DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
efm
Detailed protocol for viral enumeration of aquatic ecosystems and modern microbialites
mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
mercat2
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
MetaCerberus
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
NFixDB
Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Carolina at Charlotte (UNCC)
oneliners
One liners and useful scripts for computational biology
raw-lab's Repositories
raw-lab/MetaCerberus
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
raw-lab/mercat2
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
raw-lab/oneliners
One liners and useful scripts for computational biology
raw-lab/DeGenPrime
Primer design from single genes to whole gene families for unlocking the tree of life
raw-lab/NFixDB
Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Carolina at Charlotte (UNCC)
raw-lab/atlas-original
From Pre-print. ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data
raw-lab/BINF2111
Introduction of fundamentals of programming for bioinformatics (sometimes called “scripting”) using current programming languages and paradigms. Introduces both the language and the use of the language within a Unix environment, demonstrating how interpreted languages serve both as a useful tool for writing and testing programs interactively and as a powerful data analysis and processing tool for bioinformatics. Hands-on computing labs in which students learn bioinformatics computing and programming are also included.
raw-lab/BINF6399
Principles of Team Science at University of North Carolina at Charlotte
raw-lab/mercat
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
raw-lab/metaome_stats
Statistical package for metaome denovo assembly results.
raw-lab/BINF4900-5900
Principles of Team Science at University of North Carolina at Charlotte
raw-lab/FABI_workshop
Metagenomics and metatranscriptomics workshop -Forestry and Agricultural Biotechnology Insititute (FABI), University of Pretoria, South Africa, 22-26 October 2018
raw-lab/efm
Detailed protocol for viral enumeration of aquatic ecosystems and modern microbialites
raw-lab/potato
raw-lab/anvio
An analysis and visualization platform for 'omics data
raw-lab/cerberus
raw-lab/DeGenPrime-ez
raw-lab/HydraMPP
raw-lab/pathwrap
raw-lab/raw-lab
raw-lab/rhizospherehotspot
Rhizosphere Hotspot data and scripts.