pdec
Asst. Prof. in Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw
University of WarsawWarsaw, Poland
Pinned Repositories
ANT_H3_plasmids_genomics
This repo includes data and code used for the comparative genomic analysis of Psychrobacter sp. ANT_H3 plamids.
PhiSpy
Prediction of prophages from bacterial genomes
Phicore
work in progress. but got to do with phage genomes because they are awesome!
genbank
Python code to work with Genbank files
mgicleaner
Cleaning MGI reads from indexes and binding sequence
Phicore
work in progress. but got to do with phage genomes because they are awesome!
PhiSpy
ProphagePredictionComparisons
Comparisons of multiple different prophage predictions
SigMa
SigMa is designed to iteratively identify prophages incorporating predictions of genomes processed in each iteration
phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
pdec's Repositories
pdec/SigMa
SigMa is designed to iteratively identify prophages incorporating predictions of genomes processed in each iteration
pdec/genbank
Python code to work with Genbank files
pdec/mgicleaner
Cleaning MGI reads from indexes and binding sequence
pdec/Phicore
work in progress. but got to do with phage genomes because they are awesome!
pdec/PhiSpy
pdec/ProphagePredictionComparisons
Comparisons of multiple different prophage predictions