pdec

pdec's Stars

• files-community/Files

  A modern file manager that helps users organize their files and folders.

  Language:C#35.2k39110.2k2.2k

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++7k461.8k368

• gephi/gephi

  Gephi - The Open Graph Viz Platform

  Language:Java6k2602.5k1.6k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k51529335

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl65128133130

• ekzhu/SetSimilaritySearch

  All-pair set similarity search on millions of sets in Python and on a laptop

  Language:Python591191040

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python545159271

• merenlab/anvio

  An analysis and visualization platform for 'omics data

  Language:Python447301.7k145

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++3963316790

• rrwick/Trycycler

  A tool for generating consensus long-read assemblies for bacterial genomes

  Language:Python311157828

• ncbi/amr

  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  Language:C++2802912441

• tseemann/barrnap

  :microscope: :leo: Bacterial ribosomal RNA predictor

  Language:Perl231105740

• phac-nml/mob-suite

  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

  Language:Python1251214733

• jessieren/DeepVirFinder

  Identifying viruses from metagenomic data by deep learning

  Language:Python12344632

• seinecle/gephi-tutorials

  Open and collaborative tutorials for Gephi

  11016637

• linsalrob/PhiSpy

  Prediction of prophages from bacterial genomes

  Language:Jupyter Notebook73105521

• metagentools/MetaCoAG

  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

  Language:Python611417

• mtisza1/Cenote-Taker2

  Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

  Language:Shell552497

• susiegriggo/Phynteny

  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny

  Language:PureBasic43553

• BioinformaticsToolsmith/Identity

  Language:C++343263

• cjneely10/MetaSanity

  Pipeline for major biological analyses.

  Language:Python34395

• JoanaMPereira/GCsnap

  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts

  Language:Python25354

• linsalrob/ProphagePredictionComparisons

  Comparisons of multiple different prophage predictions

  Language:Jupyter Notebook244712

• PavlopoulosLab/NORMA

  Network annotation visualization

  Language:R17227

• sxh1136/Phage_tools

  Phage prediction tools

  Language:Shell15221

• evelienadri/ICTV_resources

  Compiled set of resources related to virus/phage classification

  310

• deprekate/goodorfs

  Code to classify open reading frames into coding and noncoding

  Language:Python130