Pinned Repositories
Bacteriatool
bacteriatool is a corpus of python script to deal with a lot of problem about bacteria genome analysis. you can use it to manage the data created by resfinder.py(https://bitbucket.org/genomicepidemiology/resfinder.git) to build a csv matrix about the presence of drug resistance genes in different individuals by Resfinder2csv.py. you can use it to manage the data created by toxicity database :VFDB by blast2.7(default output) to build a csv matrix about the presence of drug toxicity genes in different individuals by VFDB2csv.py. you can use it to extract the information like "organism","isolation_source","host","country","lat_lon","collection_date","sample_name" of GBK(GCA) file form NCBI and create a csv matrix of your information.
Brusholclasscxey
超星尔雅网课自动搞起来
Cov2gff
Covmonkey2gff pipeline for annotation of Sars-cov-2
drawyourlittletree
画一棵只属于你的小樱花吧
easy-python-scripy
easy python scripy
GearRecOut
lipingfangs.github.io
Panlineal
Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.
RiceOrthoblast
The main function of the Pipeline is to predict and control the quality of homologous loci for sequences of contig, scaffold, and fit assembly levels by using known gene libraries of proteins of known species.
VAP
a programme for visualization of short sequence alignment and path navigation in graphical pan-genome
lipingfangs's Repositories
lipingfangs/VAP
a programme for visualization of short sequence alignment and path navigation in graphical pan-genome
lipingfangs/Bacteriatool
bacteriatool is a corpus of python script to deal with a lot of problem about bacteria genome analysis. you can use it to manage the data created by resfinder.py(https://bitbucket.org/genomicepidemiology/resfinder.git) to build a csv matrix about the presence of drug resistance genes in different individuals by Resfinder2csv.py. you can use it to manage the data created by toxicity database :VFDB by blast2.7(default output) to build a csv matrix about the presence of drug toxicity genes in different individuals by VFDB2csv.py. you can use it to extract the information like "organism","isolation_source","host","country","lat_lon","collection_date","sample_name" of GBK(GCA) file form NCBI and create a csv matrix of your information.
lipingfangs/Cov2gff
Covmonkey2gff pipeline for annotation of Sars-cov-2
lipingfangs/drawyourlittletree
画一棵只属于你的小樱花吧
lipingfangs/GearRecOut
lipingfangs/Panlineal
Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.
lipingfangs/lipingfangs.github.io
lipingfangs/RiceOrthoblast
The main function of the Pipeline is to predict and control the quality of homologous loci for sequences of contig, scaffold, and fit assembly levels by using known gene libraries of proteins of known species.
lipingfangs/Brusholclasscxey
超星尔雅网课自动搞起来
lipingfangs/easy-python-scripy
easy python scripy
lipingfangs/recomgetout
Shield the recombint region of your sequence base on the result of FastGear
lipingfangs/PolyDetecter
lipingfangs/toolforGWAS
My little tools for pan-GWAS