lipingfangs's Stars
lipingfangs/VAP
a programme for visualization of short sequence alignment and path navigation in graphical pan-genome
lipingfangs/lipingfangs.github.io
betteridiot/bamnostic
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
fahaihi/PMFFRC
A Parallel Multi-FastQ-Files Reads Clustering Tool For Improving DNA Reads Compression
lipingfangs/Panlineal
Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.
lipingfangs/drawyourlittletree
画一棵只属于你的小樱花吧
lipingfangs/RiceOrthoblast
The main function of the Pipeline is to predict and control the quality of homologous loci for sequences of contig, scaffold, and fit assembly levels by using known gene libraries of proteins of known species.
lipingfangs/GearRecOut
lipingfangs/Cov2gff
Covmonkey2gff pipeline for annotation of Sars-cov-2
lipingfangs/Bacteriatool
bacteriatool is a corpus of python script to deal with a lot of problem about bacteria genome analysis. you can use it to manage the data created by resfinder.py(https://bitbucket.org/genomicepidemiology/resfinder.git) to build a csv matrix about the presence of drug resistance genes in different individuals by Resfinder2csv.py. you can use it to manage the data created by toxicity database :VFDB by blast2.7(default output) to build a csv matrix about the presence of drug toxicity genes in different individuals by VFDB2csv.py. you can use it to extract the information like "organism","isolation_source","host","country","lat_lon","collection_date","sample_name" of GBK(GCA) file form NCBI and create a csv matrix of your information.