lisavader/plasmidEC

Problem with Argument parsing

Closed this issue · 1 comments

There is some problem with the way the arguments are handled.
If I don't give -g before -t the $threads will be null and $SCRIPT_DIR will not be parsed into the subscripts

while getopts :i:c:o:fgtvh flag; do

Changed to

while getopts ":i:c:o:fgt:vh:" flag; do

Now working fine but still needs your review.

Hi Varun,
Thanks for spotting the issue, I've now added the missing colon for --threads (f06f04b)