liudan111

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ABC_DL

JAVA source code to implement the ABC-DL approach described in Mondal et al

AD3DMIL

Attention Based Deep 3D Multiple Instance Learning

AlgorithmsByPython

算法/数据结构/Python/剑指offer/机器学习/leetcode

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

bayesMCClust

:exclamation: This is a read-only mirror of the CRAN R package repository. bayesMCClust — Mixtures-of-Experts Markov Chain Clustering and Dirichlet<U+000a>Multinomial Clustering

Deep-Learning-21-Examples

《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码

EvoMIL

Prediction of virus-host association using protein language models and multiple instance learning

ILMF-VH

Kernelized Logistic Matrix Factorization based on Similarity Network Fusion for Predicting Virus-host Association

liudan111/EvoMIL

Prediction of virus-host association using protein language models and multiple instance learning

liudan111/annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

liudan111/CHERRY

Host prediction

liudan111/CL4PHI

liudan111/dashing

Fast and accurate genomic distances using HyperLogLog

liudan111/DDP-practice

A demo of deep learning with PyTorch DistributedDataParallel module.

liudan111/download-and-reannotation-of-phage-genomes

A snakemake workflow for downloading and reannotating phage genomes

liudan111/efficient-dl-systems

Efficient Deep Learning Systems course materials (HSE, YSDA)

liudan111/HIGH-PPI

liudan111/Histomorphological-Phenotype-Learning

Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Self-supervised learning discovers novel morphological clusters linked to patient outcome and molecular phenotypes. 2022'

liudan111/HOTSPOT

HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.

liudan111/inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

liudan111/leidenalg

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

liudan111/MARPPI

MARPPI: Boosting prediction of protein−protein interactions with multi-scale architecture residual network

liudan111/milieu

Mutual Interactors: A graph-based machine learning model with applications in molecular phenotype prediction

liudan111/ml_tutorial

This repository explains machine learning concepts

liudan111/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

liudan111/notebooks

Notebooks using the Hugging Face libraries 🤗

liudan111/protein-sequence-models

liudan111/ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

liudan111/ptm-mamba

liudan111/pyterrier_colbert

liudan111/rapppid

Regularised Automatic Prediction of Protein-Protein Interactions using Deep Learning

liudan111/sentence-transformers

Multilingual Sentence & Image Embeddings with BERT

liudan111/seq_ppi

This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN".

liudan111/spec2vec

Word2Vec based similarity measure of mass spectrometry data.

liudan111/STEP

Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.

liudan111/The-Python-Graph-Gallery

A website displaying hundreds of charts made with Python

liudan111/Train-LoRA-DeepSpeed

liudan111/viroinf-hiddensee

Datasets for the ViroInf Hiddensee workshop