/MARPPI

MARPPI: Boosting prediction of protein−protein interactions with multi-scale architecture residual network

Primary LanguagePython

MARPPI

MARPPI: Boosting prediction of protein−protein interactions with multi-scale architecture residual network

Xue Li1, Peifu Han1, Changnan Gao1, Wenqi Chen1, Shuang Wang1, Tao Song*1，Muyuan Niu2

  1. College of Computer Science and Technology, China University
  2. Qingdao university

Installation

git@github.com:https://github.com/xueleecs/MARPPI.git

Requirements

  • python==3.6.2
  • pandas==1.1.3
  • tensorflow==1.13.1
  • scikit-learn==0.22.1
  • scipy==1.5.4
  • setuptools==40.6.3
  • numpy==1.18.1
  • keras==2.1.0

##Code

  1. The three protein encoding methods are shown in File AD, File MMI and File PseAAC
  2. The main is sim.py

If you have other questions, please send mail to Xueleecs@gmail.com.