Pinned Repositories
bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
CHIPS
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
lisa
epigenome analysis to rank transcription factors
lisa2
MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.
RIMA_pipeline
TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
TRUST4
TCR and BCR assembly from RNA-seq data
TRUST4_manuscript_evaluation
TRUST4 manuscript evaluation
liulab-dfci's Repositories
liulab-dfci/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
liulab-dfci/TRUST4
TCR and BCR assembly from RNA-seq data
liulab-dfci/bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
liulab-dfci/RIMA_pipeline
liulab-dfci/TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
liulab-dfci/lisa2
liulab-dfci/MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.
liulab-dfci/CHIPS
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
liulab-dfci/TRUST4_manuscript_evaluation
TRUST4 manuscript evaluation
liulab-dfci/lisa
epigenome analysis to rank transcription factors
liulab-dfci/liulab-dfci.github.io
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liulab-dfci/MAPD
Model-based Analysis of Protein Degradability
liulab-dfci/DrugCellNet
Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model
liulab-dfci/Cop1_Cell_2021
Code for "In vivo CRISPR Screens Identify E3 Ligase Cop1 as a Modulator of Macrophage Infiltration and Cancer Immunotherapy Target"
liulab-dfci/RIMA
liulab-dfci/Degradability2021
Protein-intrinsic features predict tractability of targeted protein degradation
liulab-dfci/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
liulab-dfci/deepDegron
Deep learning model to predict degron sequences
liulab-dfci/MACS
MACS -- Model-based Analysis of ChIP-Seq
liulab-dfci/TRUST4_analysis
liulab-dfci/visualizirr
liulab-dfci/chromap
Fast alignment and preprocessing of chromatin profiles
liulab-dfci/DeepBCR
Deep learning framework for cancer-type classification and binding affinity estimation using B cell receptor repertoires
liulab-dfci/MAT
Model-based Analysis of Tiling-array (MAT): A model-based algorithm for finding enriched regions in ChIP-Chip experiments.