Issues
- 0
Issue with Analysis - atac_pbmc_5k_nextgem_scATAC_validcells.txt File is Empty
#169 opened by AfterDream - 3
chromap — Illegal instruction (core dumped)
#153 opened by kOoLiNuS - 4
ImportError: cannot import name typeDict
#166 opened by KunFang93 - 0
Script for Generating Gene bed files
#168 opened by htong3031 - 0
Error - overlapping regions in bedGraph line
#167 opened by Chenjunjie1996 - 10
supported species
#140 opened by pengxin2019 - 4
ModuleNotFoundError: No module named 'tables' on 1.3.1
#116 opened by f6v - 1
- 0
Obtaining 10X PBMC RNA and ATAC data from 2 different donors with annotations
#164 opened by jules-samaran - 0
- 1
whitelist and input barcode lengths are not equal
#162 opened by Bo-UT - 1
- 2
- 0
The problem of ATACCalculateGenescore
#156 opened by yuxuanChen777 - 0
therer the no argument for --frag
#155 opened by wxl123wxl - 0
Error when running 'macs2 callpeak..'
#154 opened by loraince - 1
Chromap, Less than 5% barcodes can be found or corrected based on the barcode whitelist
#152 opened by genecell - 0
- 0
Error with snATAC peakcall: ZeroDivisionError
#150 opened by itsyogeshd - 1
Can not download maestro
#149 opened by JianGuoZhou3 - 2
- 2
conflict between scrna_parser and scrna_validator
#147 opened by yxian9 - 1
Input seurat integration object
#135 opened by mudappathir - 0
Please provide tutorials for Smartseq2
#146 opened by Junjie-Hu - 2
Can't install maestro=1.5.0
#144 opened by zuoyi93 - 1
- 2
Chromap Error with MAESTRO 1.5.0
#143 opened by LunaP-831 - 1
Cannot install v1.4.0
#139 opened by llk578496 - 2
Unable to download the mapindex file for human from http://cistrome.org/~galib/Refdata_scRNA_MAESTRO_GRCh38_1.2.2.tar.gz
#138 opened by llk578496 - 8
Cannot download giggle.all.tar.gz
#133 opened by WWJiaxuan - 2
question about scATAC bulk peak calling step when using the Fragment file as input
#137 opened by yxian9 - 2
error with ATACAnnotateChromatinAccessibility
#134 opened by WWJiaxuan - 1
Installation error with conda
#119 opened by preetida - 1
- 4
Error with QC report in ATAC
#122 opened by preetida - 2
RNARunSeurat error at RunPCA stage
#131 opened by mudappathir - 1
Run with predetermined clusters
#132 opened by bc2zb - 2
RNAAnnotateTranscriptionFactor - return all tfs?
#124 opened by f6v - 2
Test file for ATAC-seq pipeline missing
#130 opened by mudappathir - 5
error reading bam file
#126 opened by taylor-shi - 4
picard: command not found
#113 opened by jphe - 3
Error Calls: ATACRunSeurat ... CreateSeuratObject.default -> CreateSeuratObject -> CreateSeuratObject.Assay
#121 opened by jphe - 20
Error: Failed to install 'MAESTRO' from GitHub
#109 opened by Pikachu233 - 5
- 5
Species Type
#112 opened by Jaureguy760 - 2
- 3
Does enhanced RP gene score drop peaks in exons/promoter regions of multiple genes?
#107 opened by mengxiao - 4
A bug in Snakemake/scRNA/Snakefile
#110 opened by QiangTU - 2
pbmc.ATAC.res$peaks
#108 opened by cadyyuheng - 1
error with ATACCalculateGenescore function
#103 opened by hoondy