Pinned Repositories
MACS
MACS -- Model-based Analysis of ChIP-Seq
bam2x
extract information from bam (sequence alignment) files and generate tables for further analysis.
emacs.el
TL's Emacs elisp addons
HMMRATAC
HMMRATAC peak caller for ATAC-seq data
SAPPER
SAPPER -- call variance from ChIP-Seq directly
taolib
Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)
taoliu's Repositories
taoliu/taolib
Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)
taoliu/generative-ai-for-beginners
12 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
taoliu/HMMRATAC
HMMRATAC peak caller for ATAC-seq data
taoliu/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
taoliu/MPRA-K562
MPRA K562 analysis source code
taoliu/SAPPER
SAPPER -- call variance from ChIP-Seq directly
taoliu/SCKMER
Generic Count Table Analysis codes (Dev)
taoliu/AI-For-Beginners
12 Weeks, 24 Lessons, AI for All!
taoliu/anndata
Annotated data.
taoliu/ataqc
taoliu/atom
:atom: The hackable text editor
taoliu/BETA_py3
BETA (Binding and Expression Target Analysis) from Cistrome
taoliu/cameraPi
Scripts for using my raspberry Pi as a camera.
taoliu/CEASp3
CEAS Python3 version
taoliu/chess.com-game-analysis
taoliu/chilin
ChIP-seq DC and QC Pipeline
taoliu/cisTopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
taoliu/coupleNMF
taoliu/cykhash
cython wrapper for khash
taoliu/explore_AI
Explore AI models
taoliu/fermi-lite
Standalone C library for assembling Illumina short reads in small regions
taoliu/Genrich
Detecting sites of genomic enrichment
taoliu/kmer-cnt
Code examples of fast and simple k-mer counters for tutorial purposes
taoliu/lisa
epigenome analysis to rank transcription factors
taoliu/MACSdata
taoliu/mlx-examples
Examples in the MLX framework
taoliu/rails
Ruby on Rails
taoliu/retriever_app
Welcome to the retrieverApp! This is an open source tool used for publication progress reporting for large collaboration networks, consortia, and individual investigators alike.
taoliu/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
taoliu/scikit-fusion
scikit-fusion: Data fusion via collective latent factor models