gene-regulatory-networks
There are 20 repositories under gene-regulatory-networks topic.
a-r-j/graphein
Protein Graph Library
liulab-dfci/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
TomKellyGenetics/graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
cailab-tamu/scTenifoldNet
A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
WPZgithub/CEFCON
Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
ashleymaeconard/TIMEOR
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
AntoinePassemiers/PORTIA-Manuscript
Source code for the paper "Fast and Accurate Inference of Gene Regulatory Networks through Robust Precision Matrix Estimation", by Passemiers et al.
calebclayreagor/DELAY
Depicting pseudotime-lagged causality for accurate gene-regulatory inference
JBris/nextflow-graph-machine-learning
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
yukuntan92/PALLAS
A tool for gene regulatory inference
harissa-framework/harissa
Simulation and inference of gene regulatory networks based on transcriptional bursting
Neelhpatel2011/GRN-reconstruction-RFR
Gene regulatory network reconstruction using random forest regression from only gene expression data from Single Cell RNA Seq Data. This project consisted of feature importance extraction and exploring different methods to investigate different and unique ways to extract feature importance to construct a gene regulatory network.
kris96tian/TF_3D_Graphs
The app visualizes a 3D graph of gene regulatory networks, allowing users to select a transcription factor and explore its neighboring interactions.
NYXFLOWER/DrugDiscovery
An explainable inductive learning model on gene regulatory and toxicogenomic knowledge graph (under development...)
uds-helms/MutaNET
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
brismonis/PDF-to-Rules
Python Code to extract gene regulatory Information and create Boolean functions from PDFs using OCR and NLP, realized as a Django Website.
javiegal/neurogenpy
Python package for estimating GRNs with Bayesian networks.
amlalejini/ALife-2020--SignalGP-Genetic-Regulation
Supplemental material associated with ALife 2020 conference submission.