Pinned Repositories
Adjutant
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
ai-blog
Repository for the RStudio AI Blog (formerly: TensorFlow for R Blog)
ALTRE
ALTered Regulatory Elements
analyzeR
An R Shiny app that accepts a CSV file with data, and outputs high level regression analysis.
AppScanGEO
Source code for ScanGEO Shiny App
ATLANTiC
Integrated analysis of genomes, transcriptomes, proteomes and drug responses of cancer cell lines (CCLs) is an emerging approach to uncover molecular mechanisms of drug action. We extend this paradigm to measuring proteome activity landscapes by acquiring and integrating quantitative data for 10,000 proteins and 55,000 phosphorylation sites (p-sites) from 125 CCLs. These data are used to contextualize proteins and p-sites and predict drug sensitivity. For example, we find that Progesterone Receptor (PGR) phosphorylation is associated with sensitivity to drugs modulating estrogen signaling such as Raloxifene. We also demonstrate that Adenylate kinase isoenzyme 1 (AK1) inactivates antimetabolites like Cytarabine. Consequently, high AK1 levels correlate with poor survival of Cytarabine-treated acute myeloid leukemia patients, qualifying AK1 as a patient stratification marker and possibly as a drug target. We provide an interactive web application termed ATLANTiC (http://atlantic.proteomics.wzw.tum.de), which enables the community to explore the thousands of novel functional associations generated by this work.
awesome-R
A curated list of awesome R packages, frameworks and software.
awesome-rshiny
An awesome R-shiny list!
cn_mooc_dl
**大学MOOC,学堂在线,网易云课堂,下载
liuxch5's Repositories
liuxch5/ai-blog
Repository for the RStudio AI Blog (formerly: TensorFlow for R Blog)
liuxch5/awesome-R
A curated list of awesome R packages, frameworks and software.
liuxch5/awesome-rshiny
An awesome R-shiny list!
liuxch5/BMDx
liuxch5/Cerebro
Visualization of scRNA-seq data.
liuxch5/cerebroApp
R package containing the Cerebro application.
liuxch5/chipPCR
Toolkit of helper functions to pre-process amplification data
liuxch5/CIPR-Package
Cluster Identity Predictor (R package implementation)
liuxch5/DATA606
Statistics and Probability for Data Analytics
liuxch5/DesktopDeployR
A framework for deploying self-contained R-based applications to the desktop
liuxch5/docs
Documentation of Hiplot Platform.
liuxch5/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
liuxch5/DT
R Interface to the jQuery Plug-in DataTables
liuxch5/fanqiang
翻墙-科学上网
liuxch5/GDCRNATools
GDCRNATools - An R package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC
liuxch5/ggedit
Interactively edit ggplot layer aesthetics and theme definitions
liuxch5/GitHub520
:kissing_heart:让你“爱”上 GitHub,解决访问时图裂、加载慢的问题。
liuxch5/heatmapper
liuxch5/home
王诗翔(Shixiang Wang)的个人网站
liuxch5/INfORM
A new tool for Inference of NetwOrk Response Modules
liuxch5/iSEEu
The iSEE Universe
liuxch5/iSwathX
iSwathX Package and Web Application
liuxch5/liuxch5.github.io
三叶草国际语已更名为“格罗比言·全球语”,本项目原则上已不再更新。新项目👉
liuxch5/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
liuxch5/pepFunk
Peptide-centric functional enrichment tool
liuxch5/RInno
How to install local shiny apps
liuxch5/shinyBN
shinyBN: An online application for interactive Bayesian network inference and visualization
liuxch5/Tidy-Tuesday
Tidy Tuesday Projects
liuxch5/Trendy
Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments
liuxch5/VisioProt-MS
Shiny application for visualisation and analysis of intact protein MS 2D maps.