Pinned Repositories
Adjutant
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
ai-blog
Repository for the RStudio AI Blog (formerly: TensorFlow for R Blog)
ALTRE
ALTered Regulatory Elements
analyzeR
An R Shiny app that accepts a CSV file with data, and outputs high level regression analysis.
AppScanGEO
Source code for ScanGEO Shiny App
ATLANTiC
Integrated analysis of genomes, transcriptomes, proteomes and drug responses of cancer cell lines (CCLs) is an emerging approach to uncover molecular mechanisms of drug action. We extend this paradigm to measuring proteome activity landscapes by acquiring and integrating quantitative data for 10,000 proteins and 55,000 phosphorylation sites (p-sites) from 125 CCLs. These data are used to contextualize proteins and p-sites and predict drug sensitivity. For example, we find that Progesterone Receptor (PGR) phosphorylation is associated with sensitivity to drugs modulating estrogen signaling such as Raloxifene. We also demonstrate that Adenylate kinase isoenzyme 1 (AK1) inactivates antimetabolites like Cytarabine. Consequently, high AK1 levels correlate with poor survival of Cytarabine-treated acute myeloid leukemia patients, qualifying AK1 as a patient stratification marker and possibly as a drug target. We provide an interactive web application termed ATLANTiC (http://atlantic.proteomics.wzw.tum.de), which enables the community to explore the thousands of novel functional associations generated by this work.
awesome-R
A curated list of awesome R packages, frameworks and software.
awesome-rshiny
An awesome R-shiny list!
cn_mooc_dl
**大学MOOC，学堂在线，网易云课堂，下载
liuxch5's Repositories
liuxch5/ALTRE
ALTered Regulatory Elements
liuxch5/analyzeR
An R Shiny app that accepts a CSV file with data, and outputs high level regression analysis.
liuxch5/AppScanGEO
Source code for ScanGEO Shiny App
liuxch5/BreastCancerAmbs_GeneMetabolite_Data
liuxch5/data_explorer
Shiny app
liuxch5/DiffNetFDR
DiffNetFDR
liuxch5/DNABarcodeCompatibility_Shiny
Web interface for DNABarcodeCompatibility
liuxch5/docfetcher
docfetcher with new features
liuxch5/EnImpute
V20190112
liuxch5/fastqcr
fastqcr: Quality Control of Sequencing Data
liuxch5/G4HunterMultiFastaSeeker
liuxch5/G4HunterScore
liuxch5/iDINGO
iDINGO R package to estimate group-specific integrative networks and make inference on the integrative differential networks, considering the biological hierarchy among the platforms
liuxch5/LipidMiniOn
Shiny interface for the Lipid Mining and Ontology (Lipid Mini-On) tool, which uses the Rodin R package
liuxch5/LocusExplorer
An interactive graphical illustration of genetic associations and their biological context
liuxch5/magic
Tool to identify monoallelic expression in polyclonal samples using ChIP-Seq data.
liuxch5/Microscope
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
liuxch5/miRFA
Functional analysis of miRNA including 1) miRNA target prediction, 2) correlation analyses between miRNA-target gene on mRNA (the cancer genome atlas) and protein levels (The cancer proteome atlas) 3) functional enrichment of significantly (positively and negatively) correlated miRNA targets.
liuxch5/pcaExplorer_serveredition
The Server Edition for pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
liuxch5/R-Shinyapp-Tutorial
liuxch5/ribsnetwork
liuxch5/School-of-Data-RR
School of Data
liuxch5/scrublet
Detect doublets in single-cell RNA-seq data
liuxch5/sema
SEMA is a graphical hypothesis testing platform for multidimensional cancer genomics data
liuxch5/Shiny_NetPredictor
liuxch5/ShinyCNV
a Shiny/R application to view and annotate copy number variations
liuxch5/simExTargId
Developed by William Edmands and supported by Josie Hayes
liuxch5/tftargets
:dart: Human transcription factor target genes.
liuxch5/TH2-demos
演示如何使用天河2号及解决常见问题
liuxch5/timeseriesNEM
timeseriesNEM