liyangyang12's Stars
SUwonglab/PECA
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
GreenleafLab/chromVAR
chromatin Variability Across Regions (of the genome!)
prashnts/metaRNA
Find target sites for the miRNAs in genomic sequences
durenzn/PECA
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
YeoLab/outrigger
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
olarerin/metaPlotR
A Perl/R pipeline for plotting metagenes
Magdoll/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
kcha/ROKU
Method for identification tissue-specific genes
BleekerLab/small-rna-seq-pipeline
A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data
ENCODE-DCC/wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
jlab-code/MethylStar
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
yupenghe/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
GuoliangLi-HZAU/BatMeth2
BS-seq analysis pipeline
jianlin-cheng/GNET2
Gene regulatory network modeling tool (GNET2)
yunhaowang/IsoSeqRep
Full-length transcriptome construction and transcribed Repeat element analysis by PacBio Isoform Sequencing (Iso-Seq) data
CopyTranslator/CopyTranslator
Foreign language reading and translation assistant based on copy and translate.