liyangyang12

liyangyang12's Stars

• SUwonglab/PECA

  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

  Language:MATLAB426

• GreenleafLab/chromVAR

  chromatin Variability Across Regions (of the genome!)

  Language:R15236

• prashnts/metaRNA

  Find target sites for the miRNAs in genomic sequences

  Language:C192

• durenzn/PECA

  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

  Language:MATLAB4

• YeoLab/outrigger

  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

  Language:Python6122

• olarerin/metaPlotR

  A Perl/R pipeline for plotting metagenes

  Language:Perl3415

• Magdoll/cDNA_Cupcake

  Miscellaneous collection of Python and R scripts for processing Iso-Seq data

  Language:Python256102

• kcha/ROKU

  Method for identification tissue-specific genes

  Language:R21

• BleekerLab/small-rna-seq-pipeline

  A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data

  Language:Python62

• ENCODE-DCC/wgbs-pipeline

  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline

  Language:Python2713

• jlab-code/MethylStar

  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

  Language:Python306

• yupenghe/methylpy

  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

  Language:Python13148

• GuoliangLi-HZAU/BatMeth2

  BS-seq analysis pipeline

  Language:C++3812

• jianlin-cheng/GNET2

  Gene regulatory network modeling tool (GNET2)

  Language:R74

• yunhaowang/IsoSeqRep

  Full-length transcriptome construction and transcribed Repeat element analysis by PacBio Isoform Sequencing (Iso-Seq) data

  Language:Python1

• CopyTranslator/CopyTranslator

  Foreign language reading and translation assistant based on copy and translate.

  Language:TypeScript17.1k1.9k