ljyanesm

ljyanesm's Stars

• rchikhi/aws-batch-runtime-monitoring

  Serverless application to monitor an AWS Batch architecture through dashboards. CloudTrail creation fork

  Language:Python1

• OpenBioSim/sire

  Sire Molecular Simulations Framework

  Language:C++3810

• google-research/tuning_playbook

  A playbook for systematically maximizing the performance of deep learning models.

  26k2.2k

• jic-dtool/dservercore

  Given a dataset UUID returns a URI to where the dataset is stored

  Language:Python45

• sharkdp/hyperfine

  A command-line benchmarking tool

  Language:Rust21k339

• tirthajyoti/Papers-Literature-ML-DL-RL-AI

  Highly cited and useful papers related to machine learning, deep learning, AI, game theory, reinforcement learning

  2.3k693

• EI-CoreBioinformatics/mikado

  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

  Language:Python9017

• thegenemyers/FASTK

  A fast K-mer counter for high-fidelity shotgun datasets

  Language:C11015

• czbiohub-sf/orpheum

  Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.

  Language:Python184

• lh3/bedtk

  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

  Language:C13315

• biowdl/ngs-performance-choices

  Which tools to choose based on various performance metrics.

  7

• openwdl/wdl

  Workflow Description Language - Specification and Implementations

  756307

• MolecularMatters/psd_sdk

  A C++ library that directly reads Photoshop PSD files.

  Language:C++60477

• Dfam-consortium/TETools

  Dfam Transposable Element Tools Docker container.

  Language:Perl7917

• ruanjue/bsalign

  Banded Striped DNA Sequence Alignment

  Language:C473

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala979353

• medvedevgroup/UST

  Language:C++253

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.2k530

• ParBLiSS/PaSGAL

  Parallel Sequence to Graph Alignment

  Language:C++343

• Piezoid/pugz

  Truly parallel gzip decompression

  Language:C++12311

• medvedevgroup/SibeliaZ

  A fast whole-genome aligner based on de Bruijn graphs

  Language:C++13819

• mxgmn/WaveFunctionCollapse

  Bitmap & tilemap generation from a single example with the help of ideas from quantum mechanics

  Language:C#23.1k1.2k

• FeCastle/tiptop

  Tiptop is a performance monitoring tool for Linux. It provides a dynamic real-time view of the tasks running in the system. tiptop is very similar to the top utility, but most of the information displayed comes from hardware counters.

  Language:C14516

• GrowCab/SpeedSeed3

  SS^3

  Language:JavaScript143

• jlfwong/speedscope

  🔬 A fast, interactive web-based viewer for performance profiles.

  Language:TypeScript5.4k236

• fogleman/Craft

  A simple Minecraft clone written in C using modern OpenGL (shaders).

  Language:C10.3k1.4k

• Piezoid/gatb-lite

  Language:C++11

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.7k402

• TonyBolger/LOGAN

  Language:C2

• xxsds/sdsl-lite

  Succinct Data Structure Library 3.0

  Language:C++8018