lkwhite

Colorado RNA biologist. Direct RNA sequencing, nanopore and tRNA enthusiast.

University of Colorado | Anschutz Medical CampusDenver, CO

Pinned Repositories

RNARePore
Direct detection of RNA repair by nanopore sequencing
Language:Shell2 3 50
Anschutz_python
Beginner Python Course
Language:Jupyter Notebook0 1 00
BamSlam
Extract and plot data from ONT direct RNA Seq alignments
Language:R0 0 00
data-sets
Data sets for MOLB 7621
0 1 00
datasharing
The Leek group guide to data sharing
0 1 00
docusaurus-test
testing docusaurus
0 1 00
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
Language:R0 1 00
lab-website-new
Language:JavaScript00
lkwhite.github.io
Language:HTML0 1 00

lkwhite's Repositories

lkwhite/Anschutz_python
Beginner Python Course
Language:Jupyter Notebook0 1 00
lkwhite/BamSlam
Extract and plot data from ONT direct RNA Seq alignments
Language:R0 0 00
lkwhite/data-sets
Data sets for MOLB 7621
0 1 00
lkwhite/datasharing
The Leek group guide to data sharing
0 1 00
lkwhite/docusaurus-test
testing docusaurus
0 1 00
lkwhite/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
Language:R0 1 00
lkwhite/lab-website-new
Language:JavaScript00
lkwhite/lkwhite.github.io
Language:HTML0 1 00
lkwhite/Nano-tRNAseq
Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing
Language:Python0 0
lkwhite/nanoRMS
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
Language:Jupyter Notebook0 0
lkwhite/ont-pipeline
Language:Python0 0
lkwhite/problem-set-1
Problem Set 1 for MOLB 7621
Language:Shell1 022
lkwhite/problem-set-2
Problem Set 2 for MOLB 7621
Language:Shell1 0
lkwhite/problem-set-4
Problem Set 4
Language:HTML1 0
lkwhite/problem-set-5
Problem Set 5 for MOLB 7621
Language:Python1 0
lkwhite/problem-set-sample
Sample problem set
Language:Shell1 0
lkwhite/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
Language:R1 0
lkwhite/remora
Methylation/modified base calling separated from basecalling.
Language:Jupyter Notebook0 0
lkwhite/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
Language:CSS1 0
lkwhite/rRNA_nanoSHAPE
Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
Language:Jupyter Notebook0 0
lkwhite/rtd-tutorial
testing read the docs
Language:Python1 0
lkwhite/StickerConstructorSpec
The Sticker Standard
1 0
lkwhite/tidyrdatasets
tidiers for the R builtin datasets
lkwhite/twoprime
analysis and workflow for twoprime-seq
Language:Python1 0
lkwhite/UCSC_track_hosting
1 0
lkwhite/website
Website for Hesselberth lab
Language:HTML1 02