logan-fink

I am a lead scientist at DCLS working to implement pipelines for outbreak analysis and detection

DCLSRichmond, VA

Pinned Repositories

IS_mapper
IS mapping software
Language:Python0 2 00
sequencing_analysis
This pipeline takes in raw fastq files, cleans them, runs them through kraken, mash, SeqSero, Serotypfinder, and abricate for antibiotic resistance determination
00
Trainingrepo
Language:Nextflow00
CDPHE
Various pipelines and scripts used by the CO state public health lab
Language:Shell2 4 44
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile191 12 361119
staph-b.github.io
Visit the site here: https://staphb.org
Language:SCSS7 8 01

logan-fink's Repositories

logan-fink/IS_mapper
IS mapping software
Language:Python0 2 00
logan-fink/sequencing_analysis
This pipeline takes in raw fastq files, cleans them, runs them through kraken, mash, SeqSero, Serotypfinder, and abricate for antibiotic resistance determination
00
logan-fink/Trainingrepo
Language:Nextflow00