lpembleton
Genomic Breeding Scientist | Strategic Science Manager at Barenbrug.
Barenbrug GlobalMelbourne, Victoria
Pinned Repositories
annotate-equations
Example of annotating equations in quarto documents
gatk4-when-did-dot-leave
Confirmation of which GATK4 versions go against VCF specifications and call missing GT as 0/0 instead of ./.
hex-stickers
Hexagon stickers of developed packages and pipelines
honeydukes
A collection of 'sweet' 'magical' R tools
plumber-pants
A base template and framework to build Nextflow pipelines from
sorting-hat
A fastq demultiplexing nextflow pipeline
StAMPP
Statistical Analysis of Mixed Ploidy Populations
t2g-SNP
Script to convert transcriptome positioned SNPs to genomically positioned.
tetris
A Nextflow pipeline for processing short read genomic data and calling variants
lpembleton's Repositories
lpembleton/annotate-equations
Example of annotating equations in quarto documents
lpembleton/t2g-SNP
Script to convert transcriptome positioned SNPs to genomically positioned.
lpembleton/gatk4-when-did-dot-leave
Confirmation of which GATK4 versions go against VCF specifications and call missing GT as 0/0 instead of ./.
lpembleton/hex-stickers
Hexagon stickers of developed packages and pipelines
lpembleton/StAMPP
Statistical Analysis of Mixed Ploidy Populations
lpembleton/honeydukes
A collection of 'sweet' 'magical' R tools
lpembleton/plumber-pants
A base template and framework to build Nextflow pipelines from
lpembleton/sorting-hat
A fastq demultiplexing nextflow pipeline
lpembleton/tetris
A Nextflow pipeline for processing short read genomic data and calling variants
lpembleton/amazon-ebs-autoscale
Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
lpembleton/bash-scripts
Collection of useful bash scripts
lpembleton/confetti
A nextflow pipeline for processes demultiplexed restriction enzyme genotyping-by-sequencing data.
lpembleton/lpembleton
lpembleton/lpembleton.blog
Personal quarto website of Luke Pembleton
lpembleton/lpembleton.rbind.io
Personal website of Luke Pembleton
lpembleton/Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
lpembleton/nextflow-website
Nextflow public web site
lpembleton/ngs-index-repos
Repository for NGS adapter and index sequence information
lpembleton/quarto-revealjs-codewindow
quarto Revealjs pluging for styled codechunks
lpembleton/R-scripts
R Scripts and Utilities
lpembleton/rweekly.org
R Weekly
lpembleton/uncertainty-vis-course