Helpers for sending data from a Python environment to ExploSig (via ExploSig Server) for web-based interactive visualization.
pip install explosig-connect>>> from explosig_connect import connect
>>> # Connect using a session ID supplied by ExploSig.
>>> session_id = 'af6242f3'
>>> conn = connect(session_id)
>>> # Obtain the SBS mutation counts matrix associated with the session.
>>> sbs_counts_df = conn.get_mutation_category_counts('SBS')
>>> # You run some custom code to derive better signature exposures.
>>> exposures_df = my_exposures_computation_method(sbs_counts_df)
>>> # Send the new exposures back to ExploSig for visualization.
>>> conn.send_exposures('SBS', exposures_df)>>> from explosig_connect import connect
>>> # Start a new 'empty' session with no samples, signatures, etc. selected.
>>> # This will attempt to open ExploSig in a new browser tab that starts the session.
>>> conn = connect()
>>> # Send an SBS mutation counts matrix to visualize.
>>> conn.send_mutation_category_counts('SBS', my_sbs_counts_df)
>>> # Send an exposures matrix to visualize.
>>> conn.send_exposures('SBS', my_sbs_exposures_df)
>>> # Send a signatures matrix to visualize.
>>> conn.send_signatures('SBS', my_sbs_signatures_df)Install for development (in editable mode):
pip install -e .Build and push to PyPI:
python setup.py sdist bdist_wheel
python -m twine upload dist/*