Pinned Repositories
ardnmf
A Python 3 implementation of automatic-relevance determination NMF (Tan & Fevotte 2013) based on their original implementation
EMF
explosig
ExploSig: web-based interactive visualization of mutation signatures and somatic mutation data
explosig-data
Data processing for ICGC mutation data
multifactorial-immune-response
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
munk
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
mutation-signatures-viz
Mutation signature visualizations
scalpelsig
sigma
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
signature-estimation-py
Implementation of the SignatureEstimation quadratic programming algorithm in Python
Leiserson Research Group's Repositories
lrgr/sigma
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
lrgr/multifactorial-immune-response
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
lrgr/munk
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
lrgr/ardnmf
A Python 3 implementation of automatic-relevance determination NMF (Tan & Fevotte 2013) based on their original implementation
lrgr/scalpelsig
lrgr/EMF
lrgr/explosig-data
Data processing for ICGC mutation data
lrgr/signature-estimation-py
Implementation of the SignatureEstimation quadratic programming algorithm in Python
lrgr/CENPA-SDL
Uses DepMap datasets and tumor data to identify SDL partners of CENPA. In collaboration with the Basrai Group at NCI.
lrgr/explosig
ExploSig: web-based interactive visualization of mutation signatures and somatic mutation data
lrgr/mutation-signatures-viz
Mutation signature visualizations
lrgr/tcsm
Tumor Covariate Signature Model
lrgr/explosig-connect
lrgr/explosig-docker
Repository to facilitate easy local deployment of ExploSig
lrgr/explosig-server
Server-side component of ExploSig web app
lrgr/gi-data
lrgr/homologene
A small pipeline to extract homologs from Homologene
lrgr/HubAlign
lrgr/lrgr.github.io
Leiserson Research Group Website
lrgr/Mix-MMM
lrgr/superdendrix-explorer
lrgr/superdendrix-explorer-data
Data processing and deployment for the SuperDendrix Explorer