lrgr/explosig

Issues

• Trinucleotide normalization per-cohort

  #103 opened 6 years ago by keller-mark
  1

• Default gene expression values

  #106 opened 6 years ago by keller-mark
  0

• Text box to exclude (filter out) samples by ID

  #93 opened 6 years ago by keller-mark
  0

• Figure out way to hierarchically group mutation classifications and pathologic stage values

  #90 opened 6 years ago by keller-mark
  2

• Add hide button to "stratification" plots

  #98 opened 6 years ago by keller-mark
  0

• Continuous-valued clinical variables as small bar plots rather than track plots

  #99 opened 6 years ago by keller-mark
  0

• Inject "Other" tissue type into oncotree for datasets unable to be matched to a single code

  #92 opened 6 years ago by keller-mark
  0

• Individual Sample Exposure Panel Doesn't Update After New Signatures Are Added

  #86 opened 6 years ago by wir963
  2

• Set priority of mutation types in genes

  #87 opened 6 years ago by wir963
  1

• Trinucleotide normalization options for signatures

  #95 opened 6 years ago by keller-mark
  0

• Options for log y-axes

  #102 opened 6 years ago by keller-mark
  0

• Smoothed exposures line plot after sorting by survival

  #101 opened 6 years ago by keller-mark
  0

• Drag to reorder signatures, clinical variables, genes

  #100 opened 6 years ago by keller-mark
  0

• After clustering, correlate with various clinical and other data (genomic events, kataegis, germline events, drug response, HRDetect, ...)

  #97 opened 6 years ago by keller-mark
  0

• Checkboxes for whether or not to consider particular signatures when clustering

  #96 opened 6 years ago by keller-mark
  0

• Allow downloading of raw counts data in addition to processed data

  #94 opened 6 years ago by keller-mark
  0

• Use websockets to load "overview" manhattan plot incrementally

  #56 opened 6 years ago by keller-mark
  0

• Implement sorting by multiple criteria and choice of ascending/descending

  #54 opened 6 years ago by keller-mark
  0

• Mutation probability across genome with signature attributions

  #62 opened 6 years ago by keller-mark
  1

• Add number of mutations per sample/chromosome to rainfall

  #64 opened 6 years ago by keller-mark
  0

• Research incorporation of GIVE genome browser

  #76 opened 6 years ago by keller-mark
  0

• Better error handling

  #80 opened 6 years ago by keller-mark
  0

• Mutation profile for single donor

  #75 opened 6 years ago by keller-mark
  0

• More clinical data

  #50 opened 6 years ago by keller-mark
  0

• Local file mode

  #47 opened 6 years ago by keller-mark
  0

• Jitter/Box plots of sample exposures per signature

  #74 opened 6 years ago by keller-mark
  0

• Make sample select more hierarchical

  #77 opened 6 years ago by keller-mark
  0

• Ability to color signatures by different categories

  #67 opened 6 years ago by keller-mark
  0

• Add number of mutations (not just exposure) in tooltips for signature exposure plot

  #69 opened 6 years ago by mdml
  0

• We should think about how to do some sort of vertical zooming in or vertical signature sorting.

  #70 opened 6 years ago by mdml
  0

• Indicators that options are global/local

  #71 opened 6 years ago by keller-mark
  1

• Stack manhattan plot

  #72 opened 6 years ago by keller-mark
  0

• Alert when URL gets too long

  #73 opened 6 years ago by keller-mark
  0

• Link the legend

  #57 opened 6 years ago by keller-mark
  2

• Continuous variable legends

  #60 opened 6 years ago by keller-mark
  0

• Testing

  #65 opened 6 years ago by keller-mark
  0

• Perform hierarchical clustering using Ward linkage

  #79 opened 6 years ago by keller-mark
  1

• Don't store plot data in the Vue instance

  #78 opened 6 years ago by keller-mark
  1

• "Overview" mode

  #51 opened 6 years ago by keller-mark
  1

• Plot: single-donor manhattan plot

  #55 opened 6 years ago by keller-mark
  0

• Broken URL

  #68 opened 6 years ago by mdml
  1

• Plot: transcriptional strand bias

  #66 opened 6 years ago by keller-mark
  0

• Add overview/about text

  #63 opened 6 years ago by keller-mark
  0

• "Signatures" mode

  #61 opened 6 years ago by keller-mark
  1

• Add SigProfiler SBS signatures-per-cancer-type "presets"

  #58 opened 6 years ago by keller-mark
  1

• Retrieve mins/maxes/ranges of values from api requests to eliminate client-side calculations

  #53 opened 6 years ago by keller-mark
  1

• Plot: single-donor exposures and clinical data

  #49 opened 6 years ago by keller-mark
  0

• Store mode in URL

  #48 opened 6 years ago by keller-mark
  0

• Use rison instead of json for cleaner URLs

  #52 opened 6 years ago by keller-mark
  0

• Use Vue mixins

  #46 opened 6 years ago by keller-mark
  0