luciansmith

luciansmith's Stars

• sys-bio/tellurium

  Python Environment for Modeling and Simulating Biological Systems

  Language:Python1102647437

• sys-bio/roadrunner

  libRoadRunner: A high-performance SBML simulator

  Language:C++411774625

• biosimulations/biosimulations

  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

  Language:TypeScript4081.3k14

• SemBioProcess/SemGen

  A tool for semantics-based annotation and composition of biosimulation models

  Language:Java1983303

• sys-bio/antimony

  Language:C++168784

• sys-bio/libOmexMeta

  libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

  Language:C86876

• sbmlteam/sbml-specifications

  The specification documents for SBML.

  Language:TeX664003

• sys-bio/teUtils

  Tellurium Utilities

  Language:Python412190

• sys-bio/libroadrunner-deps

  Dependencies for libroadrunner

  Language:CMake3975

• sys-bio/libsbml-draw

  Reads in an SBML file, and displays the network by generating a layout or using an existing layout. The SBML layout info can be saved to a new file.

  Language:Python31

• sys-bio/phrasedml

  Git mirror of https://sourceforge.net/projects/phrasedml/

  Language:C++21221

• sys-bio/reproducible-biomodel-case-study

  Reproducible case studies from BioModels

  Language:Jupyter Notebook2801

• sys-bio/RoadRunner.jl

  Language:Julia2316

• ltatka/ReactionNetworkEvolution.jl

  This package simplifies evolutionary algorithms for applications in systems biology. It can be used to generate oscillating reaction networks, networks that match input timeseries data, or fit parameters (rateconstants).

  Language:Julia1101

• sys-bio/libxml2

  Language:C130

• sys-bio/poco

  The POCO C++ Libraries are powerful cross-platform C++ libraries for building network- and internet-based applications that run on desktop, server, mobile, IoT, and embedded systems.

  Language:C120

• sys-bio/rr-libstruct

  Language:C++1301

• sys-bio/sbml2matlab

  An SBML to MATLAB Converter

  Language:SWIG192

• sys-bio/SBstoat

  Parameter optimization using Tellurium

  Language:Jupyter Notebook17194

• sys-bio/SBviper

  Unit tests for models in systems biology

  Language:Jupyter Notebook19151

• sys-bio/SRES

  Language:Component Pascal1