Pinned Repositories
cell_segmentation
FFPE_mouse_brain_explorer
Spatial transcriptomics data of coronal sections from mouse brain generated from FFPE and fresh frozen tissue.
healing_intestine_analysis
murine_colon_explorer
RRST
Code used for "Spatially resolved transcriptome profiles of degraded and challenging fresh frozen samples "
semla
spaceST
Processing and data analysis of Spatial Transcriptomics data.
STUtility_web_site
TREXSeg
Segmentation of ImmunoFluroescence image data
VisiumTrim
TSO and polyA trimming of fastq files generated with 10x Visium
ludvigla's Repositories
ludvigla/semla
ludvigla/STUtility_web_site
ludvigla/murine_colon_explorer
ludvigla/healing_intestine_analysis
ludvigla/FFPE_mouse_brain_explorer
Spatial transcriptomics data of coronal sections from mouse brain generated from FFPE and fresh frozen tissue.
ludvigla/TREXSeg
Segmentation of ImmunoFluroescence image data
ludvigla/VisiumTrim
TSO and polyA trimming of fastq files generated with 10x Visium
ludvigla/spaceST
Processing and data analysis of Spatial Transcriptomics data.
ludvigla/cell_segmentation
ludvigla/RRST
Code used for "Spatially resolved transcriptome profiles of degraded and challenging fresh frozen samples "
ludvigla/DiscovAir_data_explorer
ludvigla/EMBO_10xVisium_course
ludvigla/FFPE_analysis
ludvigla/fullstack_open_2022
Course exercises for fullstack open 2022 given by the University of Helsinki
ludvigla/fullstack_open_2022_part3
ludvigla/gtf2table
Converts a GTF file to a table with ENSEMBL ids, gene symbols and gene biotype
ludvigla/hdcaDevHeart
ludvigla/jaegten
ludvigla/liver_cell_segmentation
Segmentation of cells in HE images
ludvigla/Maize_Visium_data_analysis
Analysis and visualization of Maize Visium data
ludvigla/osd-st
Data viewer and interactive tool for spatially resolved transcriptomics data based on openseadragon
ludvigla/simUMI
ludvigla/sRIN
ludvigla/ST_UMI_simulation
Simulation of UMIs in the ST method.
ludvigla/STUtility
ludvigla/test-RCMDcheck
ludvigla/uu-exercise-Ludvig
uu python course exercises
ludvigla/Visium_experiment_prep