ludvigla

Pinned Repositories

cell_segmentation
Language:HTML1 0 00
FFPE_mouse_brain_explorer
Spatial transcriptomics data of coronal sections from mouse brain generated from FFPE and fresh frozen tissue.
Language:R3 1 12
healing_intestine_analysis
Language:HTML5 1 31
murine_colon_explorer
Language:R6 3 13
RRST
Code used for "Spatially resolved transcriptome profiles of degraded and challenging fresh frozen samples "
Language:R1 1 00
semla
Language:R50 6 296
spaceST
Processing and data analysis of Spatial Transcriptomics data.
Language:R2 1 00
STUtility_web_site
Language:R11 2 82
TREXSeg
Segmentation of ImmunoFluroescence image data
Language:HTML3 2 01
VisiumTrim
TSO and polyA trimming of fastq files generated with 10x Visium
Language:Shell3 1 01

ludvigla's Repositories

ludvigla/semla
Language:R50 6 296
ludvigla/STUtility_web_site
Language:R11 2 82
ludvigla/murine_colon_explorer
Language:R6 3 13
ludvigla/healing_intestine_analysis
Language:HTML5 1 31
ludvigla/FFPE_mouse_brain_explorer
Spatial transcriptomics data of coronal sections from mouse brain generated from FFPE and fresh frozen tissue.
Language:R3 1 12
ludvigla/TREXSeg
Segmentation of ImmunoFluroescence image data
Language:HTML3 2 01
ludvigla/VisiumTrim
TSO and polyA trimming of fastq files generated with 10x Visium
Language:Shell3 1 01
ludvigla/spaceST
Processing and data analysis of Spatial Transcriptomics data.
Language:R2 1 00
ludvigla/cell_segmentation
Language:HTML1 0 00
ludvigla/RRST
Code used for "Spatially resolved transcriptome profiles of degraded and challenging fresh frozen samples "
Language:R1 1 00
ludvigla/DiscovAir_data_explorer
Language:R
ludvigla/EMBO_10xVisium_course
Language:CSS1 0
ludvigla/FFPE_analysis
Language:HTML
ludvigla/fullstack_open_2022
Course exercises for fullstack open 2022 given by the University of Helsinki
Language:JavaScript1 0
ludvigla/fullstack_open_2022_part3
Language:JavaScript1 0
ludvigla/gtf2table
Converts a GTF file to a table with ENSEMBL ids, gene symbols and gene biotype
Language:R
ludvigla/hdcaDevHeart
1 0
ludvigla/jaegten
Language:JavaScript1 0
ludvigla/liver_cell_segmentation
Segmentation of cells in HE images
Language:R1 0
ludvigla/Maize_Visium_data_analysis
Analysis and visualization of Maize Visium data
Language:HTML
ludvigla/osd-st
Data viewer and interactive tool for spatially resolved transcriptomics data based on openseadragon
Language:JavaScript
ludvigla/simUMI
Language:Jupyter Notebook
ludvigla/sRIN
Language:R1 0
ludvigla/ST_UMI_simulation
Simulation of UMIs in the ST method.
Language:Python
ludvigla/STUtility
Language:R0 0
ludvigla/test-RCMDcheck
Language:R1 0
ludvigla/uu-exercise-Ludvig
uu python course exercises
Language:Jupyter Notebook
ludvigla/Visium_experiment_prep
Language:Shell1 0