Our dataset includes over 170,000 samples of publicly available 16S rRNA amplicon sequencing data, all processed using the same pipeline and reference database.
See the full documentation.
For the smoothest installation experience, use the BiocManager Bioconductor
package.
BiocManager::install('seandavi/MicroBioMap')
Load the compendium using:
cpd <- get_compendium()
The resulting object is a TreeSummarizedExperiment object. Currently, the
"tree" part of the TreeSummarizedExperiment is not populated, but that is
on the roadmap.