Pinned Repositories
beamsim
Python tools for simulations of particle and radiation beams and associated fields.
cphcttoolbox
Automatically exported from code.google.com/p/cphcttoolbox
CT-Reconstruction
dicom_tools
DICOM manipulation tools for MATLAB
dicommetrics
Automatically parse radiation therapy treatment plan quality returning a quality score while storing the information in a database to query against.
G4Linac
a Geant4-based application for modeling medical linear accelerators used in radiotherapy
gamma
1D, 2D, or 3D gamma computation in MATLAB
Image-Processing-Previous_NHS_MedicalPhysics_work
An example of some previous Medical Physics work I carried out previously in the NHS. Includes conference abstracts/presentations, data analysis code in Matlab and interesting project reports in MRI and Radiotherapy
Monte-Carlo-Radiation-Transport-code
Monte carlo code for thesis project
RadOnc
Analytical Tools for Radiation Oncology
lynch829's Repositories
lynch829/Brachytherapy-2
A collection of utilities to manipulate and visualise brachytherapy DICOM files
lynch829/dicom2stl
Python script to extract a STL surface from a DICOM image series.
lynch829/An-Irregular-Metal-Trace-Inpainting-Network-for-X-ray-CT-Metal-Artifact-Reduction
lynch829/AW_Liver_Lobes_To_Raystation
Code for taking segmentations created on the AW and transforming them into Raystation segmentations
lynch829/BrainC2MusingDC2Anet
Brain CT to MR Synthesis using DC2Anet
lynch829/Conquest-DICOM-Server
Conquest DICOM server, aiming for complete source code release
lynch829/Derailleur
A macOS app built to display the data from Flywheel at Home bikes without screens
lynch829/DicomToMesh
A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.
lynch829/Fabolus
Modifies STL files representing bolus for radiation therapy. Prepares them for 3D printing
lynch829/FluoMV
Beam's eye view MV fluoroscopy during external radiation therapy with ROIs projections
lynch829/IntravascularBrachytherapy
This Repository will be used for reviewing homework files
lynch829/Intro_to_Raystation
small intro teaching some useful things for raystation along with basic code
lynch829/LayerFused_X301_Marlin
Marlin 2.0.6 for the LayerFused X301 with Sensorless homing, BLTouch ABL, Auto Z alignment
lynch829/MCsquare
e0404 development clone of https://gitlab.com/openmcsquare/MCsquare
lynch829/medicalImageChanger
lynch829/metal_artifact_reduction_ct
lynch829/MRI-to-CT-using-GAN
This repository is implementation of MRI-only brain radiotherapy: assessing the dosimetric accuracy of synthetic CT images generated using a deep learning approach
lynch829/multimodal-image-fusion-to-detect-brain-tumors
Multi-modal medical image fusion to detect brain tumors using MRI and CT images
lynch829/OnkoDICOM
OnkoDICOM was created with Radiation Oncologists to allow Radiation Oncologists to do research on DICOM standard image sets (DICOM-RT, CT, MRI, PET) using open source technologies, such as pydicom, dicompyler-core, Pyqt5, PIL, and matplotlib. OnkoDICOM is cross platform, open source software, and welcomes contributions. OnkoDICOM was inspired by dicompyler.
lynch829/PinnaclePlanManage
Scripts for Pinnacle3 TPS plan data manage, including single or batch patient plans backup and restore!
lynch829/PlanQAScript
ESAPI Plan QA in Eclipse
lynch829/RayStation-Scripting-GUI-Example
This example shows event handling with XAML and using the x:Name attribute
lynch829/RayStation-scripts-1
RayStation Scripts tests
lynch829/Raystation_Oblique_to_mhd
Turning obliquely acquired images in Raystation to mhd
lynch829/Raystation_script
Basic script for Raystation
lynch829/robotics-toolbox-matlab
Robotics Toolbox for MATLAB
lynch829/RTTypes
Library for handling common data formats seen in Radiation Therapy
lynch829/SimonBiggs.github.io
lynch829/tuxguitar
Tuxguitar fork for personal dev
lynch829/voxelmorph
Unsupervised Learning for Image Registration