Pinned Repositories
beamsim
Python tools for simulations of particle and radiation beams and associated fields.
cphcttoolbox
Automatically exported from code.google.com/p/cphcttoolbox
CT-Reconstruction
dicom_tools
DICOM manipulation tools for MATLAB
dicommetrics
Automatically parse radiation therapy treatment plan quality returning a quality score while storing the information in a database to query against.
G4Linac
a Geant4-based application for modeling medical linear accelerators used in radiotherapy
gamma
1D, 2D, or 3D gamma computation in MATLAB
Image-Processing-Previous_NHS_MedicalPhysics_work
An example of some previous Medical Physics work I carried out previously in the NHS. Includes conference abstracts/presentations, data analysis code in Matlab and interesting project reports in MRI and Radiotherapy
Monte-Carlo-Radiation-Transport-code
Monte carlo code for thesis project
RadOnc
Analytical Tools for Radiation Oncology
lynch829's Repositories
lynch829/adn
ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction
lynch829/ART
Applies a synthetic deformation to an image to generate a synthetic image
lynch829/AutoSeg
Automatically contouring ROIs in CT images
lynch829/CT-Concatenation
This program will concatenate two DICOM image sets into a single dataset
lynch829/ct-mr-translation
This project is about investigating the capabilities of GAN to translate spinal CT to MRI scans and vice versa.
lynch829/deform
Efficient dense deformable image registration
lynch829/DICOM_resampling
Use this code to resample 2D and 3D medical images in matlab
lynch829/dicomtostl
Convert tomografy scan dicom files to 3D stl format
lynch829/extensions
Extensions for TOPAS
lynch829/flashgamma
Analysis of radiotherapy dose distributions
lynch829/GAN-MRI
Code repository for Frontiers article 'Generative Adversarial Networks for Image-to-Image Translation on Multi-Contrast MR Images - A Comparison of CycleGAN and UNIT'
lynch829/Import_Patients_To_Raystation
An executable and script to help with the importing of multiple patients into Raystation
lynch829/Make_Raystation_Data_Structure
Go through all patients in a raystation database to create a structure of MRN, Cases, Exams, and rois
lynch829/Medical-Image-Synthesis
It describes MRI to CT conversion, 3T to 7T conversion using Generative Adversarial Network (GAN).
lynch829/photonPencilBeamKernelCalc
Set of Matlab functions computing the convolution kernels for a singular-value-decomposed pencil beam dose calculation algorithm
lynch829/Predaq
Implementation of the paper "Predicting gamma passing rates for portal dosimetry based IMRT QA using machine learning"
lynch829/RayStation-2
lynch829/RayStation-3
Scripting für R.S
lynch829/raystation-scripts
A collection of scripts which are used in our clinic to improve workflow with the radiotherapy treatment planning system RayStation.
lynch829/RayStation-Scripts-2
Treatment Planning Scripts for RayStation
lynch829/Raystation_Create_Segmentation_For_Site
lynch829/Raystation_Export_as_mhd
For exporting MRI scans that are not axially acquired within Raystation as axial images with certain rois
lynch829/Raystation_Export_Exams_As_CSV
script for exporting exams that are given as CSV file
lynch829/RayStationScripts
Scripts for RayStation
lynch829/RayTraceDicom
Sub-second pencil beam dose calculation on GPU for adaptive proton therapy
lynch829/RegNet
Nonrigid image registration using multi-scale 3D convolutional neural networks
lynch829/SlicerRT
Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.
lynch829/SpineC2M
This repository includes Spine data based CT to MR image synthesis
lynch829/synthtorch
deep neural network-based image translation/synthesis
lynch829/Tutorial-Medical-Image-Registration
Medical Image Registration