Error about ICA-AROMA.
yangxiaokxmyt opened this issue · 18 comments
Hi Maarten,
I came up with an error that may be related to the use of ICA-AROMA. ICA-AROMA worked well with most of the subjects. However, three participants couldn't finish the preprocessing.
I checked these data again and tried several times. It still couldn't work. There are many files named thr_zstat00**.nii.gz in the ICA-AROMA folder.
The errors were same as following:
An exception has been thrown
Logic error:- detected by Newmat: index error: requested index = 0
MatrixType = Rect # Rows = 1; # Cols = 3
Traceback (most recent call last):
File "/cm/shared/ICA-AROMA/ICA_AROMA.py", line 191, in
aromafunc.runICA(fslDir, inFile, outDir, melDir, mask, dim, TR)
File "/cm/shared/ICA-AROMA/ICA_AROMA_functions.py", line 94, in runICA
lenIC=int(float(subprocess.getoutput(cmd)))
ValueError: could not convert string to float: ERROR: Could not open file
Script as following:
python2.7 /cm/shared/ICA-AROMA/ICA_AROMA.py -feat /data/pkumar/FEAT_388/Sub380/EPI_Sub380_FEAT_388.feat -out /data/pkumar/FEAT_388/Sub380/EPI_Sub380_FEAT_388.feat/ICA_AROMA/
By the way,
All the analysis were carried in the same server, same command (just replace the name of the participant, like 001......380,381) as well as the same software.
Could you help me with this problem?
Thank you very much.
Xiao
Hi Xiao,
could you update to the latest version of the AROMA scripts. No fundamental changes, but the formatting is different. Upgrading will allow determining where the error is occurring.
Other than that: how many datapoints do you have? How many components did melodic return?
This is an error we haven't encountered before, and as you indicate it works fine for all but 3 datasets, i.e., it must be something dataset-specific. In this case, it seems to be related to the thresholding of the ICA components.
As an alternative you could try and run melodic outside of ICA-AROMA. If that works out (I suspect not, but the error message might be more useful), you could pass the melodic directory as an option to AROMA - no need to rerun a successful melodic run.
Hi Maarten,
Thank you for your suggestion. Do you mean that I can run the melodic analysis without doing the ICA-AROMA?
I tried to run melodic for the three subjects after the FEAT (I used the files named filtered_func_data.nii.gz for each subjects).
There wasn't any error. After I ran melodic for the three subjects, there was a new folder with the name of ".gica" for further analysis (within it there is a folder named ".ica" includes some files, such as melodic_IC.nii.gz ). We also had a folder named "filtered_func_data_FEAT_3_putput.ica" in the main folder for each subject.
[pkumar@micc pkumar]$ cd FEAT_3_putput.gica/
[pkumar@micc FEAT_3_putput.gica]$ ls
bg_image.nii.gz inputreg report_firstlevel.html report_reg.html
design.fsf logs report.html
groupmelodic.ica mask.nii.gz report_log.html
[pkumar@micc FEAT_3_putput.gica]$ cd groupmelodic.ica/
[pkumar@micc groupmelodic.ica]$ ls
eigenvalues_adjusted mask.nii.gz melodic_IC.nii.gz melodic_PPCA report
eigenvalues_percent mean.nii.gz melodic_ICstats melodic_Tmodes stats
log.txt melodic_FTmix melodic_mix PPCA
[pkumar@micc pkumar]$ cd FEAT_3/
[pkumar@micc FEAT_3]$ LS
LS: Command not found.
[pkumar@micc FEAT_3]$ ls
Sub068 Sub374 Sub380
[pkumar@micc FEAT_3]$ pwd
/data/pkumar/FEAT_3
[pkumar@micc FEAT_3]$ cd Sub068/
[pkumar@micc Sub068]$ ls
EPI_Sub068_FEAT_3.feat EPI_Sub068.nii
[pkumar@micc Sub068]$ cd EPI_Sub068_FEAT_3.feat/
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ ls
absbrainthresh.txt logs report.html report_stats.html
design.fsf mask.nii.gz report_log.html report_unwarp.html
example_func.nii.gz mc report_poststats.html
filtered_func_data_FEAT_3_putput.ica mean_func.nii.gz report_prestats.html
filtered_func_data.nii.gz reg report_reg.html
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ cd filtered_func_data_FEAT_3_putput.ica/
[pkumar@micc filtered_func_data_FEAT_3_putput.ica]$ LS
LS: Command not found.
[pkumar@micc filtered_func_data_FEAT_3_putput.ica]$ ls
absbrainthresh.txt logs reg report_prestats.html
design.fsf mask.nii.gz reg_standard report_reg.html
example_func.nii.gz mc report.html report_unwarp.html
filtered_func_data.nii.gz mean_func.nii.gz report_log.html
Thank you very much.
Xiao
Hi Maarten,
I ran the MELODIC ICA data exploration in FEAT for the three subjects.
There isn't any error.
[pkumar@micc Sub068]$ pwd
/data/pkumar/FEAT_3/Sub068
[pkumar@micc Sub068]$ ls
EPI_Sub068_FEAT_3.feat EPI_Sub068.nii
[pkumar@micc Sub068]$ cd EPI_Sub068_FEAT_3.feat/
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ ls
absbrainthresh.txt mask.nii.gz report_poststats.html
design.fsf mc report_prestats.html
example_func.nii.gz mean_func.nii.gz report_reg.html
filtered_func_data.ica reg report_stats.html
filtered_func_data.nii.gz report.html report_unwarp.html
logs report_log.html
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ cd filtered_func_data
filtered_func_data.ica/ filtered_func_data.nii.gz
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ cd filtered_func_data.ica/
[pkumar@micc filtered_func_data.ica]$ ls
eigenvalues_percent mean.nii.gz melodic_ICstats melodic_Tmodes
log.txt melodic_FTmix melodic_mix report
mask.nii.gz melodic_IC.nii.gz melodic_PPCA
Can you give us some suggestion for the preprocessing of resting-stat fMRI data for the 3 subjects?
Thank you so much
Xiao
yes, it's the melodic data exploration you want. (Not the group ica!). You can now run AROMA with the -md option where you specify this .ica folder for each subject. AROMA will now run without running another melodic.
Hi Maarten,
Thank you for your suggestion. However we still got many files end up with thr_zstat0001.nii.gz .....thr_zstat0054.nii.gz. There were 54, 83 and 83 files named with "thr_zstat00**.nii.gz" for each subject. Let's take the first for example:
I ran the AROMA with the -md option as following:
fsl_sub python2.7 /data/pkumar/ICA-AROMA-master/ICA_AROMA.py
-in /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/filtered_func_data.nii.gz
-out /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA
-md /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/filtered_func_data.ica
Here are the results and errors:
[pkumar@micc filtered_func_data.ica]$ pwd
/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/filtered_func_data.ica
[pkumar@micc filtered_func_data.ica]$ ls
eigenvalues_percent melodic_FTmix melodic_mix python2.7.e1086733
mask.nii.gz melodic_IC.nii.gz melodic_PPCA python2.7.o1086733
mean.nii.gz melodic_ICstats melodic_Tmodes report
[pkumar@micc filtered_func_data.ica]$ cat python2.7.e1086733
An exception has been thrown
Logic error:- detected by Newmat: index error: requested index = 0
MatrixType = Rect # Rows = 1; # Cols = 3
Traceback (most recent call last):
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA.py", line 191, in
aromafunc.runICA(fslDir, inFile, outDir, melDir, mask, dim, TR)
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA_functions.py", line 101, in runICA
lenIC = int(float(subprocess.getoutput(cmd)))
ValueError: could not convert string to float: ERROR: Could not open file
[pkumar@micc filtered_func_data.ica]$ cd ..
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ pwd
/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ ls
absbrainthresh.txt logs report_log.html
AROMA mask.nii.gz report_poststats.html
design.fsf mc report_prestats.html
example_func.nii.gz mean_func.nii.gz report_reg.html
filtered_func_data.ica reg report_stats.html
filtered_func_data.nii.gz report.html report_unwarp.html
[pkumar@micc EPI_Sub068_FEAT_3.feat]$ cd AROMA/
[pkumar@micc AROMA]$ ls
mask.nii.gz thr_zstat0018.nii.gz thr_zstat0037.nii.gz
melodic.ica thr_zstat0019.nii.gz thr_zstat0038.nii.gz
thr_zstat0001.nii.gz thr_zstat0020.nii.gz thr_zstat0039.nii.gz
thr_zstat0002.nii.gz thr_zstat0021.nii.gz thr_zstat0040.nii.gz
thr_zstat0003.nii.gz thr_zstat0022.nii.gz thr_zstat0041.nii.gz
thr_zstat0004.nii.gz thr_zstat0023.nii.gz thr_zstat0042.nii.gz
thr_zstat0005.nii.gz thr_zstat0024.nii.gz thr_zstat0043.nii.gz
thr_zstat0006.nii.gz thr_zstat0025.nii.gz thr_zstat0044.nii.gz
thr_zstat0007.nii.gz thr_zstat0026.nii.gz thr_zstat0045.nii.gz
thr_zstat0008.nii.gz thr_zstat0027.nii.gz thr_zstat0046.nii.gz
thr_zstat0009.nii.gz thr_zstat0028.nii.gz thr_zstat0047.nii.gz
thr_zstat0010.nii.gz thr_zstat0029.nii.gz thr_zstat0048.nii.gz
thr_zstat0011.nii.gz thr_zstat0030.nii.gz thr_zstat0049.nii.gz
thr_zstat0012.nii.gz thr_zstat0031.nii.gz thr_zstat0050.nii.gz
thr_zstat0013.nii.gz thr_zstat0032.nii.gz thr_zstat0051.nii.gz
thr_zstat0014.nii.gz thr_zstat0033.nii.gz thr_zstat0052.nii.gz
thr_zstat0015.nii.gz thr_zstat0034.nii.gz thr_zstat0053.nii.gz
thr_zstat0016.nii.gz thr_zstat0035.nii.gz thr_zstat0054.nii.gz
thr_zstat0017.nii.gz thr_zstat0036.nii.gz
[pkumar@micc AROMA]$ cd melodic.ica/
[pkumar@micc melodic.ica]$ ls
eigenvalues_percent melodic_FTmix melodic_PPCA report
log.txt melodic_IC.nii.gz melodic_Tmodes stats
mask.nii.gz melodic_ICstats python2.7.e1086733
mean.nii.gz melodic_mix python2.7.o1086733
[pkumar@micc melodic.ica]$ cat python2.7.e1086733
An exception has been thrown
Logic error:- detected by Newmat: index error: requested index = 0
MatrixType = Rect # Rows = 1; # Cols = 3
Traceback (most recent call last):
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA.py", line 191, in
aromafunc.runICA(fslDir, inFile, outDir, melDir, mask, dim, TR)
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA_functions.py", line 101, in runICA
lenIC = int(float(subprocess.getoutput(cmd)))
ValueError: could not convert string to float: ERROR: Could not open file
[pkumar@micc melodic.ica]$ cat log.txt
Melodic Version 3.15
/cm/shared/fsl-5.0.10/bin/melodic --in=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz --ICs=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz --mix=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_mix --outdir=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica --Ostats --mmthresh=0.5
Melodic results will be in /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica
Reading data file /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC ... done
Reading components /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz ... done
Creating mask ... done
Reading mixing matrix /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_mix ... done
Running Mixture Modelling on Z-transformed IC maps ...
IC map 1 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_1
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_1
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat1
IC map 2 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_2
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_2
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat2
IC map 3 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_3
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_3
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat3
IC map 4 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_4
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_4
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat4
IC map 5 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_5
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_5
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat5
IC map 6 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_6
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_6
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat6
IC map 7 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_7
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_7
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat7
IC map 8 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_8
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_8
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat8
IC map 9 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_9
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_9
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat9
IC map 10 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_10
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_10
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat10
IC map 11 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_11
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_11
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat11
IC map 12 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_12
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_12
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat12
IC map 13 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_13
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_13
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat13
IC map 14 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_14
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_14
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat14
IC map 15 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_15
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_15
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat15
IC map 16 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_16
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_16
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat16
IC map 17 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_17
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_17
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat17
IC map 18 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_18
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_18
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat18
IC map 19 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_19
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_19
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat19
IC map 20 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_20
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_20
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat20
IC map 21 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_21
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_21
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat21
IC map 22 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_22
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_22
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat22
IC map 23 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_23
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_23
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat23
IC map 24 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_24
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_24
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat24
IC map 25 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_25
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_25
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat25
IC map 26 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_26
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_26
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat26
IC map 27 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_27
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_27
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat27
IC map 28 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_28
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_28
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat28
IC map 29 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_29
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_29
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat29
IC map 30 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_30
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_30
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat30
IC map 31 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_31
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_31
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat31
IC map 32 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_32
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_32
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat32
IC map 33 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_33
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_33
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat33
IC map 34 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_34
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_34
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat34
IC map 35 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_35
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_35
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat35
IC map 36 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_36
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_36
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat36
IC map 37 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_37
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_37
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat37
IC map 38 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_38
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_38
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat38
IC map 39 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_39
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_39
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat39
IC map 40 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_40
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_40
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat40
IC map 41 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_41
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_41
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat41
IC map 42 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_42
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_42
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat42
IC map 43 ...
calculating mixture-model fit
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_43
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_43
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat43
IC map 44 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_44
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_44
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat44
IC map 45 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_45
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_45
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat45
IC map 46 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_46
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_46
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat46
IC map 47 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_47
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_47
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat47
IC map 48 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_48
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_48
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat48
IC map 49 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_49
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_49
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat49
IC map 50 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_50
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_50
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat50
IC map 51 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_51
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_51
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat51
IC map 52 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_52
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_52
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat52
IC map 53 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_53
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_53
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat53
IC map 54 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_54
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_54
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat54
IC map 55 ...
calculating mixture-model fit
try Gaussian Mixture Model
Thank you so much.
Best
Xiao
what is the content of the stats folder inside melodic.ica?
Hi maarten, It's like this:
[pkumar@micc pkumar]$ cd /data/pkumar/FEAT_3/Sub374/EPI_Sub374_FEAT_3.feat/AROMA/melodic.ica/stats/
[pkumar@micc stats]$ ls
MMstats_1 MMstats_67 probmap_4.nii.gz thresh_zstat30.nii.gz
MMstats_10 MMstats_68 probmap_50.nii.gz thresh_zstat31.nii.gz
MMstats_11 MMstats_69 probmap_51.nii.gz thresh_zstat32.nii.gz
MMstats_12 MMstats_7 probmap_52.nii.gz thresh_zstat33.nii.gz
MMstats_13 MMstats_70 probmap_53.nii.gz thresh_zstat34.nii.gz
MMstats_14 MMstats_71 probmap_54.nii.gz thresh_zstat35.nii.gz
MMstats_15 MMstats_72 probmap_55.nii.gz thresh_zstat36.nii.gz
MMstats_16 MMstats_73 probmap_56.nii.gz thresh_zstat37.nii.gz
MMstats_17 MMstats_74 probmap_57.nii.gz thresh_zstat38.nii.gz
MMstats_18 MMstats_75 probmap_58.nii.gz thresh_zstat39.nii.gz
MMstats_19 MMstats_76 probmap_59.nii.gz thresh_zstat3.nii.gz
MMstats_2 MMstats_77 probmap_5.nii.gz thresh_zstat40.nii.gz
MMstats_20 MMstats_78 probmap_60.nii.gz thresh_zstat41.nii.gz
MMstats_21 MMstats_79 probmap_61.nii.gz thresh_zstat42.nii.gz
MMstats_22 MMstats_8 probmap_62.nii.gz thresh_zstat43.nii.gz
MMstats_23 MMstats_80 probmap_63.nii.gz thresh_zstat44.nii.gz
MMstats_24 MMstats_81 probmap_64.nii.gz thresh_zstat45.nii.gz
MMstats_25 MMstats_82 probmap_65.nii.gz thresh_zstat46.nii.gz
MMstats_26 MMstats_83 probmap_66.nii.gz thresh_zstat47.nii.gz
MMstats_27 MMstats_9 probmap_67.nii.gz thresh_zstat48.nii.gz
MMstats_28 probmap_10.nii.gz probmap_68.nii.gz thresh_zstat49.nii.gz
MMstats_29 probmap_11.nii.gz probmap_69.nii.gz thresh_zstat4.nii.gz
MMstats_3 probmap_12.nii.gz probmap_6.nii.gz thresh_zstat50.nii.gz
MMstats_30 probmap_13.nii.gz probmap_70.nii.gz thresh_zstat51.nii.gz
MMstats_31 probmap_14.nii.gz probmap_71.nii.gz thresh_zstat52.nii.gz
MMstats_32 probmap_15.nii.gz probmap_72.nii.gz thresh_zstat53.nii.gz
MMstats_33 probmap_16.nii.gz probmap_73.nii.gz thresh_zstat54.nii.gz
MMstats_34 probmap_17.nii.gz probmap_74.nii.gz thresh_zstat55.nii.gz
MMstats_35 probmap_18.nii.gz probmap_75.nii.gz thresh_zstat56.nii.gz
MMstats_36 probmap_19.nii.gz probmap_76.nii.gz thresh_zstat57.nii.gz
MMstats_37 probmap_1.nii.gz probmap_77.nii.gz thresh_zstat58.nii.gz
MMstats_38 probmap_20.nii.gz probmap_78.nii.gz thresh_zstat59.nii.gz
MMstats_39 probmap_21.nii.gz probmap_79.nii.gz thresh_zstat5.nii.gz
MMstats_4 probmap_22.nii.gz probmap_7.nii.gz thresh_zstat60.nii.gz
MMstats_40 probmap_23.nii.gz probmap_80.nii.gz thresh_zstat61.nii.gz
MMstats_41 probmap_24.nii.gz probmap_81.nii.gz thresh_zstat62.nii.gz
MMstats_42 probmap_25.nii.gz probmap_82.nii.gz thresh_zstat63.nii.gz
MMstats_43 probmap_26.nii.gz probmap_83.nii.gz thresh_zstat64.nii.gz
MMstats_44 probmap_27.nii.gz probmap_8.nii.gz thresh_zstat65.nii.gz
MMstats_45 probmap_28.nii.gz probmap_9.nii.gz thresh_zstat66.nii.gz
MMstats_46 probmap_29.nii.gz stats.log thresh_zstat67.nii.gz
MMstats_47 probmap_2.nii.gz thresh_zstat10.nii.gz thresh_zstat68.nii.gz
MMstats_48 probmap_30.nii.gz thresh_zstat11.nii.gz thresh_zstat69.nii.gz
MMstats_49 probmap_31.nii.gz thresh_zstat12.nii.gz thresh_zstat6.nii.gz
MMstats_5 probmap_32.nii.gz thresh_zstat13.nii.gz thresh_zstat70.nii.gz
MMstats_50 probmap_33.nii.gz thresh_zstat14.nii.gz thresh_zstat71.nii.gz
MMstats_51 probmap_34.nii.gz thresh_zstat15.nii.gz thresh_zstat72.nii.gz
MMstats_52 probmap_35.nii.gz thresh_zstat16.nii.gz thresh_zstat73.nii.gz
MMstats_53 probmap_36.nii.gz thresh_zstat17.nii.gz thresh_zstat74.nii.gz
MMstats_54 probmap_37.nii.gz thresh_zstat18.nii.gz thresh_zstat75.nii.gz
MMstats_55 probmap_38.nii.gz thresh_zstat19.nii.gz thresh_zstat76.nii.gz
MMstats_56 probmap_39.nii.gz thresh_zstat1.nii.gz thresh_zstat77.nii.gz
MMstats_57 probmap_3.nii.gz thresh_zstat20.nii.gz thresh_zstat78.nii.gz
MMstats_58 probmap_40.nii.gz thresh_zstat21.nii.gz thresh_zstat79.nii.gz
MMstats_59 probmap_41.nii.gz thresh_zstat22.nii.gz thresh_zstat7.nii.gz
MMstats_6 probmap_42.nii.gz thresh_zstat23.nii.gz thresh_zstat80.nii.gz
MMstats_60 probmap_43.nii.gz thresh_zstat24.nii.gz thresh_zstat81.nii.gz
MMstats_61 probmap_44.nii.gz thresh_zstat25.nii.gz thresh_zstat82.nii.gz
MMstats_62 probmap_45.nii.gz thresh_zstat26.nii.gz thresh_zstat83.nii.gz
MMstats_63 probmap_46.nii.gz thresh_zstat27.nii.gz thresh_zstat8.nii.gz
MMstats_64 probmap_47.nii.gz thresh_zstat28.nii.gz thresh_zstat9.nii.gz
MMstats_65 probmap_48.nii.gz thresh_zstat29.nii.gz
MMstats_66 probmap_49.nii.gz thresh_zstat2.nii.gz
Thanks a lot
Xiao
what is for that same subject the content of melodic.ica?
[pkumar@micc AROMA]$ cd melodic.ica/
[pkumar@micc melodic.ica]$ pwd
/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica
[pkumar@micc melodic.ica]$ ls
eigenvalues_percent melodic_FTmix melodic_PPCA report
log.txt melodic_IC.nii.gz melodic_Tmodes stats
mask.nii.gz melodic_ICstats python2.7.e1086733
mean.nii.gz melodic_mix python2.7.o1086733
[pkumar@micc melodic.ica]$ cat python2.7.e1086733
An exception has been thrown
Logic error:- detected by Newmat: index error: requested index = 0
MatrixType = Rect # Rows = 1; # Cols = 3
Traceback (most recent call last):
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA.py", line 191, in
aromafunc.runICA(fslDir, inFile, outDir, melDir, mask, dim, TR)
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA_functions.py", line 101, in runICA
lenIC = int(float(subprocess.getoutput(cmd)))
ValueError: could not convert string to float: ERROR: Could not open file
This is not the same subject:
/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica
/data/pkumar/FEAT_3/Sub374/EPI_Sub374_FEAT_3.feat/AROMA/melodic.ica/stats/
Please provide content for melodic.ica and melodic.ica/stats for the same subject/run
what is the content of log.txt, python2.7.e1086733 and python2.7.o1086733?
what does fslinfo melodic_IC.nii.gz return?
hi maarten,
thank you for your time. I do appreciate it!
here is the information
[pkumar@micc melodic.ica]$ pwd
/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica
[pkumar@micc melodic.ica]$ ls
eigenvalues_percent melodic_FTmix melodic_PPCA report
log.txt melodic_IC.nii.gz melodic_Tmodes stats
mask.nii.gz melodic_ICstats python2.7.e1086733
mean.nii.gz melodic_mix python2.7.o1086733
# [pkumar@micc melodic.ica]$ cat log.txt
Melodic Version 3.15
/cm/shared/fsl-5.0.10/bin/melodic --in=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz --ICs=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz --mix=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_mix --outdir=/data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica --Ostats --mmthresh=0.5
Melodic results will be in /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica
Reading data file /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC ... done
Reading components /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_IC.nii.gz ... done
Creating mask ... done
Reading mixing matrix /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/melodic_mix ... done
Running Mixture Modelling on Z-transformed IC maps ...
IC map 1 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_1
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_1
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat1
IC map 2 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_2
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_2
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat2
IC map 3 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_3
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_3
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat3
IC map 4 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_4
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_4
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat4
IC map 5 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_5
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_5
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat5
IC map 6 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_6
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_6
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat6
IC map 7 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_7
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_7
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat7
IC map 8 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_8
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_8
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat8
IC map 9 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_9
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_9
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat9
IC map 10 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_10
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_10
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat10
IC map 11 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_11
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_11
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat11
IC map 12 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_12
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_12
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat12
IC map 13 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_13
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_13
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat13
IC map 14 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_14
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_14
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat14
IC map 15 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_15
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_15
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat15
IC map 16 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_16
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_16
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat16
IC map 17 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_17
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_17
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat17
IC map 18 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_18
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_18
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat18
IC map 19 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_19
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_19
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat19
IC map 20 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_20
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_20
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat20
IC map 21 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_21
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_21
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat21
IC map 22 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_22
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_22
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat22
IC map 23 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_23
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_23
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat23
IC map 24 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_24
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_24
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat24
IC map 25 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_25
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_25
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat25
IC map 26 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_26
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_26
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat26
IC map 27 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_27
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_27
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat27
IC map 28 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_28
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_28
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat28
IC map 29 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_29
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_29
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat29
IC map 30 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_30
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_30
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat30
IC map 31 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_31
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_31
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat31
IC map 32 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_32
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_32
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat32
IC map 33 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_33
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_33
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat33
IC map 34 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_34
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_34
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat34
IC map 35 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_35
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_35
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat35
IC map 36 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_36
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_36
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat36
IC map 37 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_37
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_37
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat37
IC map 38 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_38
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_38
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat38
IC map 39 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_39
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_39
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat39
IC map 40 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_40
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_40
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat40
IC map 41 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_41
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_41
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat41
IC map 42 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_42
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_42
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat42
IC map 43 ...
calculating mixture-model fit
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_43
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_43
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat43
IC map 44 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_44
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_44
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat44
IC map 45 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_45
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_45
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat45
IC map 46 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_46
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_46
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat46
IC map 47 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_47
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_47
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat47
IC map 48 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_48
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_48
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat48
IC map 49 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_49
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_49
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat49
IC map 50 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_50
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_50
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat50
IC map 51 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_51
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_51
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat51
IC map 52 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_52
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_52
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat52
IC map 53 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_53
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_53
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat53
IC map 54 ...
calculating mixture-model fit
try Gaussian Mixture Model
saving probability map: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/probmap_54
saving mixture model fit: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/MMstats_54
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
saving thresholded Z-stats image: /data/pkumar/FEAT_3/Sub068/EPI_Sub068_FEAT_3.feat/AROMA/melodic.ica/stats/thresh_zstat54
IC map 55 ...
calculating mixture-model fit
try Gaussian Mixture Model
# [pkumar@micc melodic.ica]$ cat python2.7.e1086733
An exception has been thrown
Logic error:- detected by Newmat: index error: requested index = 0
MatrixType = Rect # Rows = 1; # Cols = 3
Traceback (most recent call last):
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA.py", line 191, in
aromafunc.runICA(fslDir, inFile, outDir, melDir, mask, dim, TR)
File "/data/pkumar/ICA-AROMA-master/ICA_AROMA_functions.py", line 101, in runICA
lenIC = int(float(subprocess.getoutput(cmd)))
ValueError: could not convert string to float: ERROR: Could not open file
# [pkumar@micc melodic.ica]$ cat python2.7.o1086733
------------------------------- RUNNING ICA-AROMA -------------------------------
--------------- 'ICA-based Automatic Removal Of Motion Artifacts' ---------------
No mc file specified.
Step 1) MELODIC
- The existing/specified MELODIC directory will be used.
- The MELODIC directory does not contain the required 'stats' folder. Mixture modeling on the Z-statistical maps will be run.
# [pkumar@micc melodic.ica]$ fslinfo melodic_IC.nii.gz
data_type FLOAT32
dim1 64
dim2 64
dim3 38
dim4 81
datatype 16
pixdim1 3.750000
pixdim2 3.750000
pixdim3 4.000002
pixdim4 1.000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
Thanks again
xiao
Hmm, there are 81 components in the melodic_IC, but the log file stops after thresholding IC map 54... There must be something off with your datasets. Is their any chance you could provide me with the filtered_func_data.nii.gz file for this participant? (email removed)
we determined that the problem was related to an artefact in the input data that dominated the ensuing ICA decomposition. This issue is not related to ICA-AROMA.