Pinned Repositories
BinPacker
from https://sourceforge.net/projects/transcriptomeassembly/files/
DoveParentsRNAseq
Characterizing the neurogenomics of parental care in the rock dove
Gen711
general
general code
Geosmithia_manuscript
GeosmithiaComparativeGenomics
GeosmithiaComparativeGenomics
orp_website
Website for Oyster River Protocol
Oyster_River_Protocol
Official Repository of the Oyster River Protocol for Transcriptome Assembly
PAML
This is code for running Orthofinder -> PAML
RockDove
NSF Funded Project with Rebecca Calisi
MacManes Lab's Repositories
macmanes-lab/Oyster_River_Protocol
Official Repository of the Oyster River Protocol for Transcriptome Assembly
macmanes-lab/Gen711
macmanes-lab/DoveParentsRNAseq
Characterizing the neurogenomics of parental care in the rock dove
macmanes-lab/orp_website
Website for Oyster River Protocol
macmanes-lab/general
general code
macmanes-lab/dnazoo_annotation
This is the code to reproduce the DNAzoo genome annotations.
macmanes-lab/EMBL_Workshop
Materials for the EMBL-EBI workshop
macmanes-lab/MCBS913_2019
This is the repo for the Spring 2019 version of MCBS913
macmanes-lab/OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
macmanes-lab/peer_rnaseq
PEER RNA seq manuscript
macmanes-lab/testesDGE
files for Laurens DGE paper
macmanes-lab/RockDove
NSF Funded Project with Rebecca Calisi
macmanes-lab/Dockerfiles
docker files
macmanes-lab/driftR
population genetic simulations with R and Shiny
macmanes-lab/G606_Phylogenetics
For Gen606 Phylogenetics lesson
macmanes-lab/HackMD
HackMD notes
macmanes-lab/kmers_as_metrics
Can you use kmers to evaluate transcriptiome assemblies
macmanes-lab/Lauren
macmanes-lab/museum_genomics
This is the repo for the Museum Genomics Paper
macmanes-lab/nhen
Nhen's stuff
macmanes-lab/pecr_genome
Files used for pecr genome
macmanes-lab/peer_reproductive-transcriptome
for manuscript
macmanes-lab/phylotator
Phylotator is software for using ideas from phylogenetics to annotate transcripts
macmanes-lab/sequencetools
Set of scripts etc. to work with DNA sequence and related files
macmanes-lab/Shannon
RNA-Seq
macmanes-lab/spatial
macmanes-lab/transrate
Understand your transcriptome assembly
macmanes-lab/tuco_manuscript
AL Tuco Manuscript Code
macmanes-lab/Umea_Workshop
Materials for the Umea Workshop
macmanes-lab/XSEDE18
2018 Xsede application