/PAML

This is code for running Orthofinder -> PAML

Primary LanguageShellMIT LicenseMIT

Dependencies

PAML
Raxml
pal2nal
prank
rpy2
R

this is the stuff for running paml

python /share/OrthoFinder/orthofinder.py -f genomes/ -t 60
bash sco.sh
bash sco2cds.sh
bash autoPAML.sh -t 45