macros29
I am a staff scientist at Dr. Tarik F. Haydar's lab. I study brain development and neurodevelopmental diseases. I do a lot of single cell sequencing.
Children's National Research InstituteWashington, DC, USA
macros29's Stars
royerlab/dexp
Dataset EXploration & Processing
chunglabmit/pystripe
An image processing package for removing streaks from SPIM images
shahab-sarmashghi/Skmer
Fast and accurate tool for estimating genomic distances between genome-skims
vals/umis
Tools for processing UMI RNA-tag data
cuongng980415/R-Script-for-pulling-articles
YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
alexdobin/STAR
RNA-seq aligner
Cadair/jupyter_environment_kernels
An Jupyter plugin to enable the automatic detection of conda and virtualenv environments as kernels.
iperov/DeepFaceLab
DeepFaceLab is the leading software for creating deepfakes.
klovens/pineplot
macs3-project/MACS
MACS -- Model-based Analysis of ChIP-Seq
brianhie/scanorama
Panoramic stitching of single cell data
10XGenomics/cellranger
10x Genomics Single Cell Analysis
lanagarmire/SSrGE
Foundry376/Mailspring
:love_letter: A beautiful, fast and fully open source mail client for Mac, Windows and Linux.
AllonKleinLab/SPRING
hagenaue/BrainInABlender
An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA; 2Genet., Univ. of Michigan, Ann Arbor, MI, USA; 3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA
rhondabacher/SCnorm
Normalization for single cell RNA-seq data
hillas/scVEGs
JustinaZ/pcaReduce
Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"
hft7h11/vivi
mobilars/BLEConnect
Android app for downloading heart rate data from the Polar H7 chest belt.
linzx06/AC-PCA
AC-PCA: simultaneously performs dimension reduction and adjustment for confounding variation
johnhowe/BlueTerm
BlueTerm is the result of mix Term and BluetoothChat sample. http://pymasde.es/blueterm/
sgivan/RNA-Seq-Toolkit
Resources that facilitate and automate the analysis of RNA-Seq data
PMBio/scLVM
scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
linnarsson-lab/BackSPIN
Biclustering algorithm
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
ipython/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.