madagiurgiu25/decoil-pre

Issues

• KeyError when running decoil

  #17 opened 3 months ago by eesiribloom
  2

• Input VCF from somatic variant callers

  #16 opened a month ago by eesiribloom
  5

• Discrepancy in ecDNA count between `decoil-pipeline -f sv-reconstruct` and `decoil reconstruct` using BigWig files

  #19 opened 2 months ago by RP-Silk
  2

• adjusting decoil reconstruct parameters

  #14 opened 5 months ago by eesiribloom
  5

• Problems with Decoil installacion from source.

  #18 opened 2 months ago by MJoseMo
  6

• T2T Reference Genome

  #15 opened 5 months ago by thomasjay3
  1

• ecDNA Filtering

  #11 opened 8 months ago by thomasjay3
  5

• Genes contained within ecDNA

  #13 opened 8 months ago by eesiribloom
  0

• Conda package for decoil

  #12 opened 8 months ago by madagiurgiu25
  0

• Use conda to install Decoil

  #4 opened 8 months ago by madagiurgiu25
  8

• Stuck at "Combine simple circles" step while running Decoil

  #5 opened 8 months ago by zhober
  14

• No summary.txt file produced

  #8 opened 8 months ago by eesiribloom
  8

• visualising the output of decoil

  #7 opened 8 months ago by eesiribloom
  3

• Use singularity to run Decoil

  #2 opened 8 months ago by madagiurgiu25
  3

• Hope a command only for Decoil Reconstruction

  #9 opened 8 months ago by zhober
  2

• parameters

  #6 opened 10 months ago by eesiribloom
  3

• Use pip to install Decoil

  #3 opened a year ago by madagiurgiu25
  0

• An IsADirectoryError when generate summary.txt in the final step.

  #1 opened a year ago by Uigi1600
  6