magnusdv/pedtools

Issues

• How can I change the font size of labels on pedigree plots?

  #53 opened 3 months ago by sdhutchins
  3

• `ped` function speedup

  #54 opened 2 months ago by deepchocolate
  3

• `distributeMarkers` and `dist` argument

  #35 opened 5 months ago by thoree
  1

• Problem with differing data types of ID-vecors in `ped()`

  #52 opened 6 months ago by deepchocolate
  1

• Adding children across components

  #48 opened 9 months ago by magnusdv
  0

• `transferMarkers()` does not work as expected if `from` is a list

  #51 opened 9 months ago by bragef
  2

• Inaccurate error message in `addSon()`/`addDaughter()`

  #50 opened 9 months ago by chrcarrizosa
  1

• `setAfreq()` should update mutation models

  #49 opened a year ago by magnusdv
  0

• componentwise `nMarkers()`

  #46 opened a year ago by magnusdv
  0

• `randomPed()` error

  #45 opened 2 years ago by magnusdv
  1

• `print.ped()` should return the pedigree (not the data frame) invisibly

  #43 opened 2 years ago by magnusdv
  0

• Definition of generations

  #44 opened 2 years ago by zachariae
  2

• fill argument for `plot.ped()`

  #39 opened 2 years ago by chrcarrizosa
  1

• Plot one marker

  #41 opened 2 years ago by thoree
  2

• `randomPed()` error

  #42 opened 2 years ago by chrcarrizosa
  1

• `swapSex()` messes up X-chromosomal markers

  #40 opened 2 years ago by magnusdv
  0

• Disconnected random pedigrees

  #31 opened 2 years ago by magnusdv
  0

• Malformed random pedigrees with selfing

  #30 opened 2 years ago by magnusdv
  2

• Unplottable pedigrees

  #3 opened 2 years ago by magnusdv
  2

• New errors breaking (marriage) loops

  #37 opened 2 years ago by zachariae
  4

• consolidate function - feature request

  #36 opened 3 years ago by thoree
  0

• `addMarker()` ped list fail

  #32 opened 3 years ago by magnusdv
  0

• distributeMarkers and NA

  #34 opened 3 years ago by thoree
  1

• `readPed()` fails when ID labels have spaces

  #29 opened 3 years ago by magnusdv
  0

• Feature requests for `transferMarkers`

  #26 opened 4 years ago by thoree
  1

• Markers with same names allowed

  #27 opened 4 years ago by thoree
  1

• Check for duplicated allele names?

  #28 opened 4 years ago by thoree
  1

• Failed to install 'pedtools' from GitHub

  #25 opened 4 years ago by thoree
  2

• implementation of missing parents

  #24 opened 4 years ago by larahurban
  5

• Implement `as.data.frame()` and `writePed()` for lists

  #18 opened 5 years ago by magnusdv
  0

• Release pedtools 0.9.0

  #23 opened 5 years ago by magnusdv
  0

• `setFrequencyDatabase` and marker name

  #21 opened 5 years ago by thoree
  6

• Problem installing with `build_vignettes = TRUE`

  #22 opened 5 years ago by thoree
  2

• Changing mutation model

  #19 opened 5 years ago by thoree
  3

• `custom` mutation model

  #20 opened 5 years ago by thoree
  2

• Some functions not exported?

  #16 opened 5 years ago by thoree
  1

• sorted output from getAlleles

  #13 opened 6 years ago by thoree
  1

• `getAlleles()` output and marker names

  #14 opened 6 years ago by thoree
  1

• request for getSex for list of pedigrees and singletons

  #15 opened 6 years ago by thoree
  1

• getAlleles for X

  #12 opened 6 years ago by thoree
  2

• Functions for manipulating the allele matrix

  #11 opened 6 years ago by magnusdv
  1

• `transferMarkers()` doesn't catch duplicated IDs

  #10 opened 6 years ago by magnusdv
  0

• transferMarkers changing too much?

  #9 opened 6 years ago by thoree
  5

• posCm

  #5 opened 6 years ago by thoree
  1

• `addParents()` should add parents *before* the child

  #8 opened 6 years ago by magnusdv
  0

• plotPedList not run example

  #7 opened 6 years ago by thoree
  1

• linearPed

  #6 opened 6 years ago by thoree
  1

• Duplicated individuals

  #2 opened 6 years ago by thoree
  3

• validate_ped

  #4 opened 6 years ago by thoree
  0

• proportional model in `mutationMatrix()`

  #1 opened 6 years ago by magnusdv
  1