mahmudhera

fmh-funprofiler

A functional profiler for metagenomes using FracMinHash

mutation-rate-ci-calculator

This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.

YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome

dist-sim-metrics-using-fmh

Compute different metrics using FMH, and also without using sketch, and see the results

dn-ds-using-fracminhash

fancy-mutation-model

A "non-simple" mutation model supporting insertion, deletion and substitutions

frac-kmc

Fast FracMinHash sketch generator

kRISP-mER

A tool to generate personalized guide RNAs for CRISPR without using a reference genome

phylogenetic-tree-using-fracminhash

This repo can be thought of as a counterpart to Mashtree - which computes a tree based off of Mash distance. Instead, in this repo, we build a tree based off of FracMinHash distance.

qual-exams

mahmudhera/Artificial-Neural-Network-based-Image-Classifier

Implementation of a neural network from scratch by coding the backpropagation algorithm.

mahmudhera/associative-cache

An associative L1 and L2 cache simulator

mahmudhera/cf-solutions

mahmudhera/EnviroSCALE

This is a code repository that is to be installed in a raspberry pi to make the pi headless.

mahmudhera/Fall21AlgorithmsImplementations

Implementations of all algorithms taught in Fall 2021, 565: Algo Analysis and Design

mahmudhera/hello_world

This is my "Hello Wrld" project.

mahmudhera/Implementation-of-a-simple-raster-based-pipeline

This is an implementation of a simple Raster-based graphics pipeline.

mahmudhera/iot_actuation_commands

# Commands

mahmudhera/K-means-clustering-on-2-dimensional-data-points-with-visual-representation

This project implements the K-means clustering algorithm on a set of 2D data points.

mahmudhera/kRISP-meR_

Reference free guide RNA designing tool

mahmudhera/linux-socket-programming-using-c

mahmudhera/Mancala-AI-Agent

This is an AI agent which can autonomously play the game Mancala.

mahmudhera/Multiteller-Bank-Simulating-with-Jockeying

mahmudhera/pairwise-ani-calculation

mahmudhera/Ray-tracer-augmenting-texture

This is a class project that implements basic ray tracing algorithm and support texturing.

mahmudhera/RFID-Controlled-Smart-Class-Monitoring

This is a hardware project, a prototype of a smart classroom attendance system, which is controlled and maintained using RFID chips. All students will have RFID tags with them. Using the tags, the students will enter/leave the classroom, which automatically takes their attendance as well.

mahmudhera/scaled-minhash-experiment-two-genomes

mahmudhera/scaled-minhash-large-metagenome-expt

mahmudhera/Solving-Sudoku-from-input-files-using-various-heuristics

This projects solves the game Sudoku using various AI heuristics.

mahmudhera/Solving-Travelling-Salesman-Problem-using-Local-Search

This project uses hill-climbing to solve the famous travelling-salesman problem.

mahmudhera/temp-files

mahmudhera/TextClassifier

This is a class project to implement a text classifier. Multiple xml files downloaded from stackexchange were used in the project. Two classifiers have been implemented in the project: KNN and Naive-Bayes. The xml documents are splitted into training, validating and testing points, and then a comparison between the two types of classifiers are shown.