Pinned Repositories
temporal-predictive-coding
Predictive coding networks for temporal prediction
brain_dti_pca
dentify
Dentify is a Python package designed for the CoTreatAI Challenge. It facilitates data processing, model training, and prediction for dental x-ray images, specifically focusing on identifying and numbering teeth using the YOLOv8 model instance segmentation method.
infrachat-doc
lung-digitiser
A Python application to sample discrete points across the surfaces of Finite Element lung meshes and export them as digitised coordinates and corresponding group classes.
predictive_coding_app
A web app to showcase our recent study on temporal predictive coding.
SFEAL
Statistical Finite Element Analysis of Lung (SFEAL)
Stride-and-Slice-Images
Slice an image into smaller images (overlapping or non-overlapping). This is a custom built script without the use of any predefined function. The algorithm that will help an image analysis enthusiast to understand how striding, padding and convolution works.
mahyar-osn's Repositories
mahyar-osn/dentify
Dentify is a Python package designed for the CoTreatAI Challenge. It facilitates data processing, model training, and prediction for dental x-ray images, specifically focusing on identifying and numbering teeth using the YOLOv8 model instance segmentation method.
mahyar-osn/infrachat-doc
mahyar-osn/lung-digitiser
A Python application to sample discrete points across the surfaces of Finite Element lung meshes and export them as digitised coordinates and corresponding group classes.
mahyar-osn/mahyar-osn
mahyar-osn/SFEAL
Statistical Finite Element Analysis of Lung (SFEAL)
mahyar-osn/flatmap-maker
Make anatomical flatmaps from Powerpoint slides.
mahyar-osn/predictive_coding_app
A web app to showcase our recent study on temporal predictive coding.
mahyar-osn/scaffoldfitter
A repository for fitting anatomical scaffolds to data.
mahyar-osn/heart-scaffold-decomposition
mahyar-osn/heartcsv2ex
This program converts extracted heart surface points in CSV to EX format suitable for OpenCMISS-Zinc.
mahyar-osn/hubmap2scaffold
A custom Python script to convert HuBMAP CCF Reference Models to OpenCMISS-ZINC EX data format
mahyar-osn/infrachat-qa
mahyar-osn/lung-annotation-maker
mahyar-osn/lung-annotator
An application to train and predict 3D lung point cloud annotations using a deep learning method.
mahyar-osn/lung-point-generator
mahyar-osn/lung_batch_fit
This repo contains necessary codes to run a batch fitting process for annotated lung data using ScaffoldMaker and OpenCMISS-Zinc
mahyar-osn/lung_exdata_combiner
A small application to combine single group OpenCMISS Zinc data into a single multi-group EX data.
mahyar-osn/map-knowledge
Flatmap knowledge store
mahyar-osn/mapclientplugins.cimconverterstep
A MAPClient plugin to convert heart data in CIM .model format to a csv format.
mahyar-osn/mapclientplugins.geometricfitstep
MAP Client plugin for geometric fitting of meshes using OpenCMISS-Zinc.
mahyar-osn/mapclientplugins.heartdataconverterstep
A MAPClient plugin to convert extracted heart data in CSV format to OpenCMISS-ZINC Ex format.
mahyar-osn/MishManners
mahyar-osn/my-resume
mahyar-osn/path-query
mahyar-osn/predict-algae-species
A simple workflow for training and predicting algae cells using the vanilla Unet model.
mahyar-osn/scaffold-pathway-maker
mahyar-osn/scaffoldmaker
Anatomical scaffold generator using OpenCMISS
mahyar-osn/stl2ex
mahyar-osn/sugam1111
mahyar-osn/temporal-predictive-coding
Predictive coding networks for temporal prediction