Pinned Repositories
temporal-predictive-coding
Predictive coding networks for temporal prediction
brain_dti_pca
dentify
Dentify is a Python package designed for the CoTreatAI Challenge. It facilitates data processing, model training, and prediction for dental x-ray images, specifically focusing on identifying and numbering teeth using the YOLOv8 model instance segmentation method.
infrachat-doc
lung-digitiser
A Python application to sample discrete points across the surfaces of Finite Element lung meshes and export them as digitised coordinates and corresponding group classes.
predictive_coding_app
A web app to showcase our recent study on temporal predictive coding.
SFEAL
Statistical Finite Element Analysis of Lung (SFEAL)
Stride-and-Slice-Images
Slice an image into smaller images (overlapping or non-overlapping). This is a custom built script without the use of any predefined function. The algorithm that will help an image analysis enthusiast to understand how striding, padding and convolution works.
mahyar-osn's Repositories
mahyar-osn/phynn
mahyar-osn/zinc
Source code repository for OpenCMISS-Zinc
mahyar-osn/add_extra_field
Add a new field to the scaffold
mahyar-osn/covid-abm-manager
A framework for covid-19 agent-based simulation within a given spatial environment.
mahyar-osn/covid19_nz_data_processing
mahyar-osn/flatmap-pathway-routing
mahyar-osn/mahyar-osn.github.io
Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.
mahyar-osn/mapclient-for-pyside1.2.4-linux
A "hacked" version of MAPClient to work on Linux with PySide 1.2.4
mahyar-osn/mapclientplugins.datamapstep
mahyar-osn/mapclientplugins.datatrimmerstep
A mapclient step to trim anatomical mesh groups from Zinc EX data files.
mahyar-osn/mapclientplugins.scaffoldgroupmanagerstep
mahyar-osn/meshrefine
A simple script to refine and export Zinc mesh files.
mahyar-osn/moh-data
mahyar-osn/neuroglancer-scripts
Conversion of neuroimaging data for display in Neuroglancer
mahyar-osn/opencmiss.zincwidgets
A collection of Qt widgets and utilities for Zinc.
mahyar-osn/pec_muscle_shape_analysis
mahyar-osn/plotting_app
mahyar-osn/PyGeoJson
Open GeoJSON data on geojson.io
mahyar-osn/pyside-for-linux
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mahyar-osn/pyside1.2.4-for-linux
A "hack" version of PySide 1 to install on latest Linux and Python versions.
mahyar-osn/qupath
QuPath - Open Source Digital Pathology
mahyar-osn/scaffoldaverage
mahyar-osn/scaffoldmaker-documentation
mahyar-osn/seir
OpenCOR-based Python script to model Covid-19 using the SEIR model.
mahyar-osn/SSA_Corpus_Callosum
Statistical Shape Analysis of corpus callosum structures from brain diffusion tensor imaging (DTI).
mahyar-osn/topography
mahyar-osn/transform_exf_geometries
Transform (currently only scale) EX format files (Zinc/CMGUI/MBFXML2EX).
mahyar-osn/unitysimulation-coronavirus-example
Unity Simulation Coronavirus Example
mahyar-osn/vis-tools
Visualization Toolkit
mahyar-osn/zinc-mesh-example
An example of reading custom node parameters into zinc to construct a mesh.