Pinned Repositories
bioinformatic_scripts
Bioinformatic Scripts written in Kotlin Script, Python, R, etc. that may use BioKotlin, TASSEL 5, TASSEL 6, PHG, etc. as dependencies
BioKotlin
breeder-notebook
A Jupyter Docker Stack for Plant Scientists and Breeders
bwa-mem2
The next version of bwa-mem
MGJars
R package for distributing jar files for rTASSEL and rPHG methods.
phg_v2
PHG version 2
rPHG
R front-end for the Practical Haplotype Graph (PHG)
rPHG2
R interface to PHGv2
rTASSEL
R front-end for TASSEL
tassel-6-source
Maize Genetics's Repositories
maize-genetics/rTASSEL
R front-end for TASSEL
maize-genetics/phg_v2
PHG version 2
maize-genetics/BioKotlin
maize-genetics/rPHG
R front-end for the Practical Haplotype Graph (PHG)
maize-genetics/tassel-6-source
maize-genetics/bioinformatic_scripts
Bioinformatic Scripts written in Kotlin Script, Python, R, etc. that may use BioKotlin, TASSEL 5, TASSEL 6, PHG, etc. as dependencies
maize-genetics/breeder-notebook
A Jupyter Docker Stack for Plant Scientists and Breeders
maize-genetics/bwa-mem2
The next version of bwa-mem
maize-genetics/rPHG2
R interface to PHGv2
maize-genetics/bioconductor_test
maize-genetics/biokotlin-tools
Command line tools related to BioKotlin
maize-genetics/breeder-genomics-hub
The Breeder Genomics Hub is a batteries-included JupyterHub distribution for breeders (Pangeo for plant scientists)
maize-genetics/Field-Book
Field Book
maize-genetics/kotlin-compiler-server
Server for executing kotlin code
maize-genetics/kotlin-jupyter-libraries
Library descriptors for Kotlin kernel for Jupyter
maize-genetics/maize-genetics.github.io
Deployment site for test code
maize-genetics/MGJars
R package for distributing jar files for rTASSEL and rPHG methods.
maize-genetics/models
Model zoo for genomics
maize-genetics/phg-docs
maize-genetics/rTASSEL_sandbox
rTASSEL sandbox environment using Binder
maize-genetics/commonbean-phg-v2
Scripts and notes for building a common bean PHG using v2 architecture
maize-genetics/hubtools
Utility functions designed for R notebooks within the Breeder's Genomics Hub
maize-genetics/msaR
The BioJS MSA viewer wrapped into an R package
maize-genetics/reelGeneShiny
Shiny App from the hackathon of reelGene scores and other data