maize-genetics/phg_v2

Issues

• [BUG]: Same Key ID for different ranges in ref VCF

  #258 opened a month ago by jsarriaa
  4

• [REQUEST]: create-maf-vcf --legacy-maf-file documentation for _1 and _2 files

  #252 opened a month ago by jesse-hill
  2

• [REQUEST]: Add a note suggesting _JAVA_OPTIONS to resolve OutOfMemoryError

  #254 opened a month ago by gtbil
  1

• [BUG]: Process Builder Error 132 in AGC compress / Illegal instruction (core dumped)

  #244 opened a month ago by pmvijar
  6

• [REQUEST]: imputation from VCF

  #235 opened 2 months ago by ClayBirkett
  0

• Out of memory problem while creating fasta from hvcf

  #191 opened 5 months ago by sidevshiy
  5

• [BUG]: Compatilibilty issue between the pipeline

  #220 opened 3 months ago by gsc74
  14

• [REQUEST]: allow non-conda installation of dependencies

  #208 opened 4 months ago by dirkjanvw
  10

• [BUG]: map-kmers does not fully strip file extension that includes .gz suffix

  #205 opened 4 months ago by matthewwiese
  3

• Mapping Paired-End Reads with PHG Takes Too Long

  #187 opened 5 months ago by sidevshiy
  12

• [BUG]: There is no command in phg prepare-slurm-align-file

  #183 opened 5 months ago by sidevshiy
  3

• [REQUEST]: PathtoGFF Plugin

  #159 opened 8 months ago by em255
  1

• Error when running build-kmer-index command

  #152 opened 8 months ago by beantkapoor786
  3

• [BUG]: kmer index is empty

  #136 opened 8 months ago by em255
  5

• align-assemblies error

  #144 opened 9 months ago by beantkapoor786
  4

• [BUG]: gvcf2hvcf arguments not working

  #128 opened 9 months ago by em255
  1