Pinned Repositories
bpr
generate pseudoreplicates from bam files for idr analyses
clique-signal
Differential signal (chip/atac) of cis-regulatory cliques; unofficial companion to CRCMapper
frip
quick frip scores
rosy
work in progress - port of rose super enhancer calling algorithm to r
tcq
util for annotating reads from labeled nascent rna-seq assays
mal2017's Repositories
mal2017/bpr
generate pseudoreplicates from bam files for idr analyses
mal2017/ap2
minimalist atac-seq preprocessing pipeline for cloud, cluster or desktop
mal2017/assembly-qc
mal2017/csp2
workhorse chipseq pipeline for generating peaks and bigwigs in cloud, cluster, or local machine. nothing fancy.
mal2017/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
mal2017/FlybaseAnki
mal2017/generic_dfam_extract
mal2017/generic_masked_genome_plus_tes
mal2017/genome-plus-repeats
mal2017/gte21-chimeric-rnaseq
mal2017/gte21-custom-genome
mal2017/gte21-ica-grid
mal2017/gte21-pirna-kd-rnaseq
mal2017/gte21-scrna
mal2017/gte21-star-bulk-tpn
mal2017/gte21-te-variant-expression
mal2017/gte21-tidal-xa
mal2017/gte21-total-rna-fusions
mal2017/gte21-y-hetchrom
mal2017/houR-seminar-sep2021
mal2017/ica_community_grid_search
mal2017/miscAsmQC
mal2017/ptera
mal2017/reference-with-transposons
mal2017/sfr
tally Y,X mapped reads
mal2017/slai-ov-reanalysis
mal2017/TestisTEs2021
mal2017/tetf_downstream
mal2017/transposon-variants-hts
mal2017/transposons
Drosophila transposable element canonical sequences