mal2017

Pinned Repositories

bpr
generate pseudoreplicates from bam files for idr analyses
Language:Rust0 1 20
clique-signal
Differential signal (chip/atac) of cis-regulatory cliques; unofficial companion to CRCMapper
Language:R1 1 00
frip
quick frip scores
Language:Rust0 1 11
gte21-pirna-kd-rnaseq
Language:Python1 2 00
rosy
work in progress - port of rose super enhancer calling algorithm to r
Language:R1 1 00
tcq
util for annotating reads from labeled nascent rna-seq assays
Language:Rust0 1 30

mal2017's Repositories

mal2017/gte21-pirna-kd-rnaseq
Language:Python1 2 00
mal2017/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Language:Python1 0
mal2017/fca_reanalysis
Language:R
mal2017/FlybaseAnki
Language:R
mal2017/generic_dfam_extract
Language:Python1 0
mal2017/generic_masked_genome_plus_tes
Language:Python1 0
mal2017/genome-plus-repeats
Language:Nextflow2 0
mal2017/gte21-ica-grid
Language:Python2 01
mal2017/gte21-scrna
Language:Python1
mal2017/gte21-total-rna-fusions
Language:Python2 01
mal2017/houR-seminar-sep2021
Language:R2 0
mal2017/miscAsmQC
Language:R2 0
mal2017/ptera
Language:R1 0
mal2017/scTE
Language:Jupyter Notebook
mal2017/slai-ov-reanalysis
Language:R
mal2017/TestisTEs2021
Language:R2 01
mal2017/tetf
Language:Python
mal2017/tetf3
Language:R
mal2017/tetf_csem_mosaics
Language:R
mal2017/tetf_dgrp_wgs
Language:Python
mal2017/tetf_downstream
Language:R1 0
mal2017/tetf_expression_quant
Language:Python
mal2017/tetf_expression_quant_dataset2
Language:Python
mal2017/tetf_kd
Language:Python
mal2017/tetf_lm_coex
Language:R
mal2017/tetf_lm_coex_dataset2
Language:Python
mal2017/tetf_refs
Language:Python
mal2017/tetf_ripseq
Language:Python
mal2017/tetf_tidal
Language:R
mal2017/transposons
Drosophila transposable element canonical sequences