mal2017

mal2017's Stars

• s3fs-fuse/s3fs-fuse

  FUSE-based file system backed by Amazon S3

  Language:C++8.5k1741.2k1k

• rfordatascience/tidytuesday

  Official repo for the #tidytuesday project

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• kahing/goofys

  a high-performance, POSIX-ish Amazon S3 file system written in Go

  Language:Go5.2k118635523

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k24823963

• nhaouari/obsidian-textgenerator-plugin

  Text Generator is a versatile plugin for Obsidian that allows you to generate text content using various AI providers, including OpenAI, Anthropic, Google and local models.

  Language:TypeScript1.4k23223124

• awslabs/open-data-registry

  A registry of publicly available datasets on AWS

  Language:Python1.4k7099885

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k18241619

• hrbrmstr/hrbrthemes

  :lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

  Language:R1.2k244795

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  56834290

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  541356121

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python461818347

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R36787653

• conda-incubator/condacolab

  Install Conda and friends on Google Colab, easily

  Language:Jupyter Notebook33654647

• hughjonesd/huxtable

  An R package to create styled tables in multiple output formats, with a friendly, modern interface.

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• liulab-dfci/MAESTRO

  Single-cell Transcriptome and Regulome Analysis Pipeline

  Language:C2741210375

• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R232133179

• jamesotto852/ggdensity

  An R package for interpretable visualizations of bivariate density estimates

  Language:R22842914

• OpenGene/awesome-bio-datasets

  awesome-bio-datasets

  21518042

• Irrationone/cellassign

  Automated, probabilistic assignment of cell types in scRNA-seq data

  Language:R192138981

• brentp/bio-playground

  miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

  Language:C1811616104

• SingleR-inc/SingleR

  Clone of the Bioconductor repository for the SingleR package.

  Language:R1721221019

• brentp/hts-nim

  nim wrapper for htslib for parsing genomics data files

  Language:Nim155105626

• mortazavilab/TALON

  Technology agnostic long read analysis pipeline for transcriptomes

  Language:Python134514131

• PoisonAlien/trackplot

  Generate IGV style locus tracks from bigWig files in R

  Language:R12933916

• dynverse/dynmethods

  A collection of 50+ trajectory inference methods within a common interface 📥📤

  Language:R1181010526

• kharchenkolab/dropEst

  Pipeline for initial analysis of droplet-based single-cell RNA-seq data

  Language:C++861513243

• SaskiaFreytag/schex

  Language:R723179

• bergmanlab/drosophila-transposons

  Drosophila transposable element canonical sequences

  Language:Rich Text Format2482711

• 10XGenomics/rust-bwa

  Rust wrapper of the BWA C API

  Language:Rust1714210

• MD-Anderson-Bioinformatics/NGCHM-R

  An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

  Language:R77443