cellgeni/sceasy

Issues

• h5ad to Seurat conversion "AttributeError: 'dict' object has no attribute 'dtype'"

  #77 opened a year ago by jestlin15
  2

• failure to convert attributeError: 'dict' object has no attribute 'dtype'

  #85 opened a year ago by Flu09
  1

• error raised while reading key '/layers' of type <class 'h5py._hl.group.Group' when converting h5ad to seurat object

  #93 opened 4 months ago by pandaqiuqiu
  0

• use_condaenv error: in python_config_impl(python)

  #92 opened 4 months ago by JerryZhang-1222
  0

• Error in seurat to Anndata conversion

  #33 opened 4 years ago by HaikuoLi
  4

• When encountering a NumPy-related error while using a conversion function on an Seurat object

  #91 opened 6 months ago by liuzhuoliang123
  2

• Seurat Assay5

  #76 opened a year ago by ValYianni
  5

• Question regarding conversion time from AnnData to Seurat object

  #90 opened 7 months ago by qianzach
  0

• Non-existent Function Documentation

  #89 opened 8 months ago by DarioS
  0

• I wonder that the h5ad file convert from Seurat, if it was read in scapy, where is the raw dada?

  #88 opened 9 months ago by BioinfoXP
  0

• no slot of name "meta.features" for this object of class "Assay5"

  #82 opened a year ago by Rohit-Satyam
  1

• convert h5ad to seruat problem (pandas)

  #84 opened a year ago by Flu09
  3

• Converting Xenium object from R

  #87 opened 9 months ago by man154
  0

• Failure to convert h5ad to Rds

  #86 opened 10 months ago by RookieA1
  4

• Convert h5ad file to seurat file

  #78 opened a year ago by sanderslhc
  8

• Failure to convert SingleCellExperiment (trajectory analysis object) to h5ad

  #83 opened a year ago by Yanst86
  0

• convertFormat function do not support v5

  #81 opened a year ago by ixxmu
  0

• Spatial data

  #71 opened 2 years ago by AndrewSkelton
  2

• negative length vectors are not allowed : Error when converting anndata to seurat

  #75 opened a year ago by bapoorva
  1

• Unable to convert Seurat object to H5AD

  #44 opened 3 years ago by dfermin
  2

• No module named 'numpy.core._multiarray_umath'

  #80 opened a year ago by chrarnold
  0

• Not possible to install from conda package

  #79 opened a year ago by stevekm
  1

• Error when anndata to seurat

  #45 opened 3 years ago by GouQiao
  3

• error convert anndata to seurat

  #65 opened 2 years ago by Polligator
  2

• Export feature loadings in `anndata2seurat`

  #74 opened 2 years ago by Zepeng-Mu
  0

• Hello everyone, I am having issues running sceasy for conversion from sce object to anndata. Following repo instructions, I run:

  #72 opened 2 years ago by Pancreaticpathway
  2

• Error: Cannot find 'class' in this Seurat object

  #73 opened 2 years ago by ShanSabri
  1

• memory issues trying to convert from anndata to Seurat

  #70 opened 2 years ago by massisnascimento
  0

• Problems setting up the proper environment

  #67 opened 2 years ago by mariapozo
  1

• Anndata to Seurat Object, Error in match

  #54 opened 3 years ago by tomthun
  4

• seurat to anndata formatting adata.X as CSC sparse resulting in inefficient handling

  #69 opened 2 years ago by dpcook
  0

• Evaluation error: Unable to convert R object to Python type

  #68 opened 2 years ago by Christ14n97
  0

• RStudio crashing with convertFormat - Anndata to Seurat

  #66 opened 2 years ago by sarakn97
  1

• Would it be possible to get a new release of SCEasy so that it is picked up by bioconda?

  #62 opened 2 years ago by pcm32
  3

• Updating dependencies

  #57 opened 2 years ago by errcricket
  1

• Converting SCE to LOOM obs and var attribute names

  #59 opened 2 years ago by SimonDMurray
  1

• Error when converting anndata to seurat

  #56 opened 2 years ago by Merlin2333
  2

• [import of anndata] Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments

  #61 opened 2 years ago by siberianisaev
  2

• sce to anndata - Adata does not contain a `counts` layer in `adata.layers[`counts`]`

  #53 opened 3 years ago by stemangiola
  1

• Error for anndata to seurat conversion

  #55 opened 3 years ago by EliseAld
  2

• The big issue about converting h5ad into seurat rds

  #49 opened 3 years ago by honghh2018
  2

• Error in AnnData to Seurat

  #43 opened 3 years ago by Zethson
  1

• from AnnData to Seurat, AttributeError: 'dict' object has no attribute 'dtype'

  #47 opened 3 years ago by ekernf01
  2

• sce to anndata missing colPair in tbsp

  #46 opened 3 years ago by Zepeng-Mu
  0

• AnnData -> SingleCellExperiment planned?

  #35 opened 4 years ago by TheAustinator
  2

• Can't install sceasy with Conda

  #36 opened 4 years ago by aghr
  4

• How should I run sceasy?

  #40 opened 3 years ago by AAA-3
  1

• sce to anndata error

  #39 opened 3 years ago by hchintalapudi
  0

• Which seuart data was converted to adata.X?

  #37 opened 4 years ago by FADHLyemen
  5

• Error converting loom to anndata

  #34 opened 4 years ago by Vinayaksiv-17
  0