aghr

Bioinformatics / Machine Learning

Pinned Repositories

bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
atacseq
ATAC-seq peak-calling and QC analysis pipeline
Language:Nextflow181 144 150116
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
Language:Nextflow186 142 181145
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Language:Nextflow57 143 11332
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
Language:Nextflow88 135 9354
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow874 151 644697

aghr/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00