Issues
- 0
Picard "--TMP_DIR" arguments are hardcoded
#378 opened by vondoRishi - 0
ERROR ~ Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE
#377 opened by Kermaa - 1
- 1
- 1
New release please?
#373 opened by siddharthab - 0
- 1
Process terminated for an unknown reason (SLURM)
#339 opened by hdbeukel - 2
question for constructing samplesheet
#349 opened by pseudacriscrucifer - 3
Feature Request: call peaks for each replicate (diffbind), not only the merged data
#367 opened by lindenb - 1
Please pin the version of the nf-validation plugin!
#354 opened by mirpedrol - 7
Increase memory allocation for BEDTOOLS_GENOMECOV
#344 opened by SPPearce - 2
Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:CUSTOM_DUMPSOFTWAREVERSIONS (1)'
#330 opened by anijudy - 1
deprecated container formats
#361 opened by LinearParadox - 4
Unable to join Slack channel
#364 opened by JessicaHacheney - 1
Remove lib library
#353 opened by JoseEspinosa - 1
Get template v2.13.1 (get rid of lib)
#356 opened by JoseEspinosa - 1
Improve website on parameters section Alignment Options for argument --save_unaligned
#359 opened by aghr - 2
CONTROL description needs clarifications
#337 opened by mdozmorov - 2
Fix double slash in directory urls
#332 opened by jhanifen - 2
URGENT: pin nf-validation version
#351 opened by nvnieuwk - 0
- 0
Feature Request: summary table for each sample
#345 opened by lindenb - 0
bam_csi_index parameter for ATACSeq
#343 opened by BianyunY-ACRD - 0
- 4
- 0
MAKE_GENE_BED making 0kb .bed files
#334 opened by hcliedtke - 1
CSI bam index not working
#327 opened by heathfuqua - 1
fasta parameter required when using nf-core launch even if --genome is provided
#322 opened by JoseEspinosa - 3
Blacklist option causes pipeline to fail
#268 opened by StevenWingett - 3
Process `NFCORE_ATACSEQ:ATACSEQ:MERGED_LIBRARY_ATAQV_MKARV` terminated with an error exit status (1)
#302 opened by kkim111 - 4
NameError: name 'logger' is not defined
#263 opened by kokyriakidis - 2
Terminated by the external system
#281 opened by CLAIRE-cuhk - 2
- 3
ERROR ~ A process input channel evaluates to null -- Invalid declaration ` val mito_name`
#306 opened by JiahuaQu - 1
[Question]: FRiP score calculation
#317 opened by tamuanand - 2
- 2
- 4
'--read_length' and '--macs_gsize' Setting Confusion
#303 opened by anijudy - 3
- 1
- 2
ATAQV TSS Enrichment Plots Not Rendering Properly
#276 opened by ieres-amgen - 2
General statistics table in MultiQC report
#269 opened by berguner - 1
nf-core download skips 'bowtie2 align' singularity image with container string parsing error
#270 opened by JoseEspinosa - 4
- 3
zipped fasta file doesn't work
#277 opened by rodriguesk - 2
IGV cannot open the session file
#278 opened by ktrns - 1
- 1
- 1
Add GRCm39 option to config
#273 opened by laurenhsu1 - 1