Irrationone/cellassign

Issues

• module 'tensorflow' has no attribute 'reset_default_graph'

  #100 opened 2 years ago by keenhl
  4

• install error

  #106 opened 8 months ago by Soleilcode
  0

• Error in tensorflow::install_tensorflow(extra_packages='tensorflow-probability', version = "2.1.0")

  #105 opened 10 months ago by martibonomi
  0

• Problem installing tensorflow-probability -- "no such option: --no-user"

  #104 opened a year ago by pvo93
  0

• Error: ValueError: Tried to convert 'shape' to a tensor and failed. Error: Cannot convert a partially known TensorShape (1, ?) to a Tensor

  #101 opened 2 years ago by Alarabi1980
  2

• Gene cluster annotation scRNA-seq integrated data set

  #91 opened 3 years ago by cpolk3
  1

• too much unassigned cells

  #103 opened a year ago by Romhop
  0

• cells should have non-zero library sizes or 'scaling' values

  #102 opened 2 years ago by Romhop
  0

• TensorFlow Probability requires a newer version of TensorFlow than available via devtools

  #98 opened 2 years ago by ameekbhalla
  1

• All cells from simulated matrix are assigned to one group with probability 1

  #96 opened 2 years ago by agalvezm
  0

• Error: Cannot convert a partially known TensorShape to a Tensor: (1, ?)

  #92 opened 3 years ago by kmh005
  4

• Documentation workflow does not work with conda install

  #80 opened 4 years ago by keithgmitchell
  2

• Installation failed

  #75 opened 4 years ago by Sa753
  2

• Are there any preconfigured `marker_gene_info` files?

  #95 opened 3 years ago by jolespin
  0

• Failed "tensorflow::install_tensorflow()"

  #78 opened 4 years ago by levinhein
  7

• Error in py_call_impl(callable, dots$args, dots$keywords) : ValueError: Tried to convert 'shape' to a tensor and failed.

  #94 opened 3 years ago by RuiyuRayWang
  7

• Error in py_module_import(module, convert = convert) :

  #93 opened 3 years ago by D13001788135
  1

• I keep getting Error in cellassign(exprs_obj = sub_sizefac, marker_gene_info = reorder_markersel, : nrow(rho) == G is not TRUE

  #67 opened 5 years ago by smk5g5
  2

• How this method performs compares to SingleR

  #90 opened 3 years ago by ShaowenJ
  0

• Size factor of CellAssign

  #89 opened 3 years ago by Bio-MingChen
  1

• The cpu resource exhausting

  #88 opened 3 years ago by honghh2018
  1

• The tensorflow install in the location that i don't want to

  #87 opened 3 years ago by honghh2018
  0

• Error: tensorflow/core/framework/cpu_allocator_impl.cc:81: Allocation of exceeds 10% of system memory

  #66 opened 5 years ago by rosshandler
  5

• output of marker_list_to_mat missing a lot of genes and cell types of the provided list

  #86 opened 4 years ago by moutazhelal
  0

• Error in detecting my system's architechture while installing Cellassign

  #85 opened 4 years ago by moutazhelal
  0

• conda package does not depend on python, tensorflow, tensorflow-probability

  #84 opened 4 years ago by aksarkar
  0

• problem installation with conda

  #83 opened 4 years ago by ERIGR
  1

• Implementation in scvi-tools

  #82 opened 4 years ago by adamgayoso
  9

• Number of genes provided in marker_gene_info should match number of genes in exprs_obj and be marker genes only

  #77 opened 4 years ago by evenDDDDD
  3

• imbalanced marker lists

  #81 opened 4 years ago by kmh005
  2

• Parallelization error

  #79 opened 4 years ago by petrsh
  0

• identify cells negative for a certain marker

  #76 opened 4 years ago by aldojongejan
  0

• Library cellassign aborted R session

  #74 opened 4 years ago by Drqyzhuang
  0

• Length(s) == nrow(Y) is not TRUE

  #72 opened 4 years ago by avln24
  4

• example_marker_mat

  #61 opened 5 years ago by 865699871
  2

• Issue with running "Basic usage" example

  #73 opened 4 years ago by hyguo2
  0

• Issue with running "Basic usage" example

  #71 opened 4 years ago by paula-tataru
  0

• Reproducing Paper

  #69 opened 5 years ago by chanwkimlab
  1

• Remove invalid chunk from introduction vignette

  #70 opened 5 years ago by rargelaguet
  1

• links to vignettes are broken

  #68 opened 5 years ago by mjhubisz
  0

• version is too old on bioconda

  #65 opened 5 years ago by icanwinwyz
  1

• Installation issue

  #63 opened 5 years ago by hxy265
  9

• SizeFactors() does not add size factors to SingleCellObject

  #64 opened 5 years ago by tkapello
  3

• Conda package.

  #54 opened 5 years ago by VicenteFR
  1

• How to perform cell-type assignments for clusters derived from unsupervised clustering?

  #62 opened 5 years ago by JingleW
  1

• CellAssign 99.16 Installation

  #59 opened 5 years ago by alyosama
  3

• cell with zero counts is assigned to a cell type

  #58 opened 5 years ago by olechnwin
  2

• Questions about parameters in cellassign function

  #56 opened 5 years ago by lxhuang7
  2

• length(s) == nrow(Y) is not TRUE

  #57 opened 5 years ago by olechnwin
  1

• AttributeError: 'module' object has no attribute 'Num'

  #53 opened 5 years ago by DadongZ
  1